Gene annotation
Transcriptome id Sobic.002G286100.1
Synonym Sb02g031850
Functional annotation DUF292 domain containing protein, expressed
UniProt C5X721
Pfam PF03398
Panther DB PTHR12161 PTHR12161:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35730 : Regulator of Vps4 activity in the MVB pathway protein
RAP-DB (Rice) LOC_Os09g37510.1 : DUF292 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047984
Brachypodium KQJ91336 , KQJ91335 , PNT65080
Barley HORVU5Hr1G086370.1 , HORVU5Hr1G086370.5 , HORVU5Hr1G086370.4 , HORVU5Hr1G086370.2 , HORVU5Hr1G086370.3
Wheat TraesCS5A02G346800 , TraesCS5B02G347800 , TraesCS5D02G353300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G108400 heavy-metal-associated domain-containing protein, putative, expressed -
2 Sobic.009G084100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
3 Sobic.003G320300 ZOS1-12 - C2H2 zinc finger protein, expressed -
4 Sobic.005G157300 protein binding protein, putative, expressed -
5 Sobic.001G295400 protein kinase domain containing protein, expressed K02214: cell division control protein 7
6 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.001G452900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
8 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
9 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
10 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
11 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
12 Sobic.006G221300 expressed protein -
13 Sobic.010G177100 expressed protein -
14 Sobic.009G127800 BZIP protein, putative, expressed -
15 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
16 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
17 Sobic.006G147900 expressed protein -
18 Sobic.010G003300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
19 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase


Gene co-expression network
sample Sobic002G286100 Sobic002G286100 Sobic004G108400 Sobic004G108400 Sobic002G286100--Sobic004G108400 Sobic009G084100 Sobic009G084100 Sobic002G286100--Sobic009G084100 Sobic003G320300 Sobic003G320300 Sobic002G286100--Sobic003G320300 Sobic005G157300 Sobic005G157300 Sobic002G286100--Sobic005G157300 Sobic001G295400 Sobic001G295400 Sobic002G286100--Sobic001G295400 Sobic009G225500 Sobic009G225500 Sobic002G286100--Sobic009G225500 Sobic001G452900 Sobic001G452900 Sobic002G286100--Sobic001G452900 Sobic007G008300 Sobic007G008300 Sobic002G286100--Sobic007G008300 Sobic009G172950 Sobic009G172950 Sobic002G286100--Sobic009G172950 Sobic001G054700 Sobic001G054700 Sobic004G108400--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic004G108400--Sobic006G221300 Sobic009G143200 Sobic009G143200 Sobic004G108400--Sobic009G143200 Sobic004G108400--Sobic001G452900 Sobic004G108400--Sobic007G008300 Sobic009G127800 Sobic009G127800 Sobic004G108400--Sobic009G127800 Sobic007G162400 Sobic007G162400 Sobic004G108400--Sobic007G162400 Sobic002G050700 Sobic002G050700 Sobic004G108400--Sobic002G050700 Sobic009G101100 Sobic009G101100 Sobic004G108400--Sobic009G101100 Sobic006G247800 Sobic006G247800 Sobic009G084100--Sobic006G247800 Sobic009G084100--Sobic002G286100 Sobic006G196600 Sobic006G196600 Sobic009G084100--Sobic006G196600 Sobic009G109300 Sobic009G109300 Sobic009G084100--Sobic009G109300 Sobic009G084100--Sobic001G295400 Sobic001G104500 Sobic001G104500 Sobic009G084100--Sobic001G104500 Sobic009G084100--Sobic004G108400 Sobic007G112100 Sobic007G112100 Sobic009G084100--Sobic007G112100 Sobic007G187700 Sobic007G187700 Sobic009G084100--Sobic007G187700 Sobic003G320300--Sobic007G008300 Sobic003G320300--Sobic004G108400 Sobic010G269700 Sobic010G269700 Sobic003G320300--Sobic010G269700 Sobic003G320300--Sobic001G452900 Sobic003G320300--Sobic009G172950 Sobic003G320300--Sobic005G157300 Sobic003G320300--Sobic001G295400 Sobic003G373900 Sobic003G373900 Sobic003G320300--Sobic003G373900 Sobic004G238801 Sobic004G238801 Sobic003G320300--Sobic004G238801 Sobic005G157300--Sobic009G143200 Sobic003G055600 Sobic003G055600 Sobic005G157300--Sobic003G055600 Sobic003G183700 Sobic003G183700 Sobic005G157300--Sobic003G183700 Sobic001G377700 Sobic001G377700 Sobic005G157300--Sobic001G377700 Sobic005G157300--Sobic001G054700 Sobic005G157300--Sobic006G221300 Sobic005G157300--Sobic007G187700 Sobic005G157300--Sobic009G172950 Sobic005G157300--Sobic009G127800 Sobic001G295400--Sobic007G008300 Sobic001G295400--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic001G295400--Sobic005G110535 Sobic001G295400--Sobic004G108400 Sobic002G290000 Sobic002G290000 Sobic001G295400--Sobic002G290000 Sobic001G295400--Sobic003G183700 Sobic002G420000 Sobic002G420000 Sobic001G295400--Sobic002G420000 Sobic001G295400--Sobic003G320300 Sobic006G195500 Sobic006G195500 Sobic001G295400--Sobic006G195500 Sobic009G225500--Sobic009G127800 Sobic003G259300 Sobic003G259300 Sobic009G225500--Sobic003G259300 Sobic006G142500 Sobic006G142500 Sobic009G225500--Sobic006G142500 Sobic009G225500--Sobic006G221300 Sobic010G086000 Sobic010G086000 Sobic009G225500--Sobic010G086000 Sobic001G425700 Sobic001G425700 Sobic009G225500--Sobic001G425700 Sobic004G179800 Sobic004G179800 Sobic009G225500--Sobic004G179800 Sobic006G272800 Sobic006G272800 Sobic009G225500--Sobic006G272800 Sobic006G281900 Sobic006G281900 Sobic009G225500--Sobic006G281900 Sobic001G452900--Sobic010G086000 Sobic010G241100 Sobic010G241100 Sobic001G452900--Sobic010G241100 Sobic001G452900--Sobic004G108400 Sobic010G192500 Sobic010G192500 Sobic001G452900--Sobic010G192500 Sobic001G452900--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic001G452900--Sobic003G032200 Sobic002G284100 Sobic002G284100 Sobic001G452900--Sobic002G284100 Sobic004G267600 Sobic004G267600 Sobic001G452900--Sobic004G267600 Sobic001G452900--Sobic009G172950 Sobic007G008300--Sobic001G295400 Sobic007G008300--Sobic009G172950 Sobic007G008300--Sobic004G108400 Sobic001G105800 Sobic001G105800 Sobic007G008300--Sobic001G105800 Sobic007G008300--Sobic003G320300 Sobic009G184200 Sobic009G184200 Sobic007G008300--Sobic009G184200 Sobic007G007800 Sobic007G007800 Sobic007G008300--Sobic007G007800 Sobic007G008300--Sobic001G377700 Sobic007G008300--Sobic003G055600 Sobic009G172950--Sobic003G183700 Sobic009G087000 Sobic009G087000 Sobic009G172950--Sobic009G087000 Sobic009G172950--Sobic003G032200 Sobic003G444300 Sobic003G444300 Sobic009G172950--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic009G172950--Sobic001G083300 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.