Gene annotation
Transcriptome id Sobic.001G247700.3,Sobic.001G247700.2,Sobic.001G247700.1
Synonym Sb01g021910, KCS20
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt C5X1L0 , A0A1Z5S770
Pfam PF08392 PF08541 PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF16 PTHR31561:SF16 PTHR31561
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process GO:0006633fatty acid biosynthetic process GO:0016020membrane GO:0008610lipid biosynthetic process GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT2G26640 : 3-ketoacyl-CoA synthase 11
RAP-DB (Rice) LOC_Os10g28060.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a051234 , Zm00025a020257 , Zm00025a029505 , Zm00025a006916 , Zm00025a017777 , Zm00025a000774 , Zm00025a028880
Brachypodium PNT75706 , KQK04750 , KQK04806 , KQJ96727 , KQK17805 , KQK23503
Barley HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU4Hr1G073840.2 , HORVU4Hr1G073840.3 , HORVU4Hr1G073840.4 , HORVU4Hr1G073840.5 , HORVU4Hr1G073840.6 , HORVU4Hr1G073840.7 , HORVU4Hr1G073840.8 , HORVU4Hr1G072960.1 , HORVU1Hr1G090730.1 , HORVU0Hr1G038430.2
Wheat TraesCS4A02G065300 , TraesCS4D02G242200 , TraesCS4D02G277300 , TraesCS6B02G473900 , TraesCS6A02G415500 , TraesCS6A02G415500 , TraesCS4A02G025300 , TraesCS4B02G278800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G181100 MATE efflux family protein("PubMedID : 26759170,PubMedID : 24597475")@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.003G083500 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.006G108100 LTPL81 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.001G068800 expressed protein -
5 Sobic.002G260600 BEE 1, putative, expressed -
6 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
7 Sobic.007G211200 inactive receptor kinase At2g26730 precursor, putative, expressed -
8 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
9 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
10 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -
11 Sobic.003G432000 expressed protein -
12 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
13 Sobic.005G034500 receptor kinase, putative, expressed -
14 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
15 Sobic.002G202500 spotted leaf 11, putative, expressed -
16 Sobic.004G113900 polygalacturonase, putative, expressed -
17 Sobic.001G265300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
18 Sobic.002G115700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Chalcone and stilbene synthase (At)(PubMedID : 27208977)@chalcone and stilbene synthases, putative, expressed -
19 Sobic.003G178500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
20 Sobic.004G342000 WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase


Gene co-expression network
sample Sobic001G247700 Sobic001G247700 Sobic007G181100 Sobic007G181100 Sobic001G247700--Sobic007G181100 Sobic003G083500 Sobic003G083500 Sobic001G247700--Sobic003G083500 Sobic006G108100 Sobic006G108100 Sobic001G247700--Sobic006G108100 Sobic001G068800 Sobic001G068800 Sobic001G247700--Sobic001G068800 Sobic002G260600 Sobic002G260600 Sobic001G247700--Sobic002G260600 Sobic003G113500 Sobic003G113500 Sobic001G247700--Sobic003G113500 Sobic007G211200 Sobic007G211200 Sobic001G247700--Sobic007G211200 Sobic004G357000 Sobic004G357000 Sobic001G247700--Sobic004G357000 Sobic005G129600 Sobic005G129600 Sobic001G247700--Sobic005G129600 Sobic007G181100--Sobic006G108100 Sobic007G181100--Sobic001G068800 Sobic007G181100--Sobic001G247700 Sobic002G115700 Sobic002G115700 Sobic007G181100--Sobic002G115700 Sobic007G181100--Sobic002G260600 Sobic007G181100--Sobic003G083500 Sobic002G425600 Sobic002G425600 Sobic007G181100--Sobic002G425600 Sobic007G038000 Sobic007G038000 Sobic007G181100--Sobic007G038000 Sobic001G438400 Sobic001G438400 Sobic007G181100--Sobic001G438400 Sobic003G083500--Sobic001G247700 Sobic003G083500--Sobic007G211200 Sobic001G265300 Sobic001G265300 Sobic003G083500--Sobic001G265300 Sobic005G034500 Sobic005G034500 Sobic003G083500--Sobic005G034500 Sobic003G083500--Sobic004G357000 Sobic003G083500--Sobic006G108100 Sobic003G083500--Sobic005G129600 Sobic009G025400 Sobic009G025400 Sobic003G083500--Sobic009G025400 Sobic009G257900 Sobic009G257900 Sobic003G083500--Sobic009G257900 Sobic006G108100--Sobic001G068800 Sobic006G108100--Sobic007G181100 Sobic006G108100--Sobic001G247700 Sobic006G108100--Sobic002G115700 Sobic006G108100--Sobic003G083500 Sobic006G108100--Sobic002G425600 Sobic006G108100--Sobic001G438400 Sobic004G202800 Sobic004G202800 Sobic006G108100--Sobic004G202800 Sobic006G006800 Sobic006G006800 Sobic006G108100--Sobic006G006800 Sobic001G068800--Sobic002G115700 Sobic001G068800--Sobic006G108100 Sobic001G068800--Sobic001G438400 Sobic010G049600 Sobic010G049600 Sobic001G068800--Sobic010G049600 Sobic001G491400 Sobic001G491400 Sobic001G068800--Sobic001G491400 Sobic001G266100 Sobic001G266100 Sobic001G068800--Sobic001G266100 Sobic005G200700 Sobic005G200700 Sobic001G068800--Sobic005G200700 Sobic007G049100 Sobic007G049100 Sobic001G068800--Sobic007G049100 Sobic002G399600 Sobic002G399600 Sobic001G068800--Sobic002G399600 Sobic002G260600--Sobic001G247700 Sobic002G139800 Sobic002G139800 Sobic002G260600--Sobic002G139800 Sobic002G260600--Sobic007G181100 Sobic004G113900 Sobic004G113900 Sobic002G260600--Sobic004G113900 Sobic001G267800 Sobic001G267800 Sobic002G260600--Sobic001G267800 Sobic007G189400 Sobic007G189400 Sobic002G260600--Sobic007G189400 Sobic002G072700 Sobic002G072700 Sobic002G260600--Sobic002G072700 Sobic009G254500 Sobic009G254500 Sobic002G260600--Sobic009G254500 Sobic001G228100 Sobic001G228100 Sobic002G260600--Sobic001G228100 Sobic001G199400 Sobic001G199400 Sobic003G113500--Sobic001G199400 Sobic003G113500--Sobic004G357000 Sobic004G248100 Sobic004G248100 Sobic003G113500--Sobic004G248100 Sobic004G211700 Sobic004G211700 Sobic003G113500--Sobic004G211700 Sobic003G027100 Sobic003G027100 Sobic003G113500--Sobic003G027100 Sobic010G078700 Sobic010G078700 Sobic003G113500--Sobic010G078700 Sobic003G070600 Sobic003G070600 Sobic003G113500--Sobic003G070600 Sobic004G342000 Sobic004G342000 Sobic003G113500--Sobic004G342000 Sobic002G032500 Sobic002G032500 Sobic003G113500--Sobic002G032500 Sobic001G046400 Sobic001G046400 Sobic007G211200--Sobic001G046400 Sobic007G211200--Sobic004G357000 Sobic003G089300 Sobic003G089300 Sobic007G211200--Sobic003G089300 Sobic007G211200--Sobic002G032500 Sobic007G211200--Sobic004G211700 Sobic007G211200--Sobic004G342000 Sobic007G211200--Sobic003G113500 Sobic001G135600 Sobic001G135600 Sobic007G211200--Sobic001G135600 Sobic002G337600 Sobic002G337600 Sobic007G211200--Sobic002G337600 Sobic004G357000--Sobic007G211200 Sobic004G357000--Sobic003G113500 Sobic004G317200 Sobic004G317200 Sobic004G357000--Sobic004G317200 Sobic004G357000--Sobic003G089300 Sobic004G357000--Sobic004G248100 Sobic004G357000--Sobic002G032500 Sobic004G357000--Sobic005G129600 Sobic001G470200 Sobic001G470200 Sobic004G357000--Sobic001G470200 Sobic004G357000--Sobic004G211700 Sobic005G129600--Sobic004G357000 Sobic005G129600--Sobic004G113900 Sobic003G432000 Sobic003G432000 Sobic005G129600--Sobic003G432000 Sobic005G129600--Sobic007G211200 Sobic005G129600--Sobic001G267800 Sobic002G035500 Sobic002G035500 Sobic005G129600--Sobic002G035500 Sobic005G129600--Sobic003G089300 Sobic005G129600--Sobic009G257900 Sobic005G129600--Sobic004G317200
Octagon: transcription factors


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