Gene annotation
Transcriptome id Sobic.002G194500.1
Synonym ATXTH28, XTH28, EXGT-A2, XTR2, Sb02g024120
Functional annotation glycosyl hydrolases family 16, putative, expressed
UniProt C5XC43
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF29
NCBI CDD -
KEGG Orthology K08235; xyloglucan:xyloglucosyl transferase
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G14720 : xyloglucan endotransglucosylase/hydrolase 28
RAP-DB (Rice) LOC_Os09g23220.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a032395 , Zm00025a021635 , Zm00025a034970 , Zm00025a052940 , Zm00025a048260 , Zm00025a046886
Brachypodium PNT64517 , KQK15928 , KQK00866 , KQK22653 , KQJ90139
Barley HORVU2Hr1G045330.5 , HORVU2Hr1G045330.4 , HORVU2Hr1G045330.7 , HORVU2Hr1G045330.6 , HORVU2Hr1G045330.3 , HORVU5Hr1G123920.1 , HORVU5Hr1G123920.2 , HORVU5Hr1G123920.3 , HORVU6Hr1G067470.6 , HORVU6Hr1G067470.4 , HORVU6Hr1G067470.5 , HORVU6Hr1G067470.2 , HORVU6Hr1G067470.3 , HORVU6Hr1G067470.1 , HORVU4Hr1G064220.4 , HORVU4Hr1G064220.1 , HORVU4Hr1G064220.2 , HORVU4Hr1G064220.3 , HORVU5Hr1G060340.6 , HORVU5Hr1G060340.7 , HORVU5Hr1G060340.4 , HORVU5Hr1G060340.5 , HORVU5Hr1G060340.3 , HORVU5Hr1G060340.1 , HORVU0Hr1G021280.1 , HORVU0Hr1G021280.3 , HORVU0Hr1G021280.2
Wheat TraesCSU02G018400 , TraesCS6B02G293500 , TraesCS2B02G244500 , TraesCS4B02G229500 , TraesCS6A02G088000 , TraesCS4A02G073300 , TraesCS4A02G073300 , TraesCS4D02G230600 , TraesCS5B02G202000 , TraesCS5D02G209700 , TraesCS6A02G266100 , TraesCS5A02G203300 , TraesCS6D02G248500 , TraesCS2D02G224300 , TraesCS6B02G110400
Populus -


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cDNA sequences
Sobic.002G194500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G046400 expressed protein -
2 Sobic.004G342000 WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
3 Sobic.001G119200 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.007G211200 inactive receptor kinase At2g26730 precursor, putative, expressed -
5 Sobic.007G115400 receptor-like protein kinase 5 precursor, putative, expressed -
6 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
7 Sobic.002G011000 expressed protein -
8 Sobic.010G077700 ZOS6-02 - C2H2 zinc finger protein, expressed -
9 Sobic.002G186800 strictosidine synthase, putative, expressed -
10 Sobic.002G404300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.002G029700 DUF640 domain containing protein, putative, expressed -
12 Sobic.005G226600 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.006G237800 jp18, putative, expressed -
14 Sobic.006G160800 YABBY domain containing protein, putative, expressed -
15 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.004G223100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@response regulator receiver domain containing protein, expressed K14492: two-component response regulator ARR-A family
17 Sobic.004G211700 - -
18 Sobic.009G254500 protein kinase, putative, expressed -
19 Sobic.002G032500 leucine-rich repeat family protein, putative, expressed -
20 Sobic.008G150500 - -


Gene co-expression network
sample Sobic002G194500 Sobic002G194500 Sobic001G046400 Sobic001G046400 Sobic002G194500--Sobic001G046400 Sobic004G342000 Sobic004G342000 Sobic002G194500--Sobic004G342000 Sobic001G119200 Sobic001G119200 Sobic002G194500--Sobic001G119200 Sobic007G211200 Sobic007G211200 Sobic002G194500--Sobic007G211200 Sobic007G115400 Sobic007G115400 Sobic002G194500--Sobic007G115400 Sobic003G113500 Sobic003G113500 Sobic002G194500--Sobic003G113500 Sobic002G011000 Sobic002G011000 Sobic002G194500--Sobic002G011000 Sobic010G077700 Sobic010G077700 Sobic002G194500--Sobic010G077700 Sobic002G186800 Sobic002G186800 Sobic002G194500--Sobic002G186800 Sobic001G046400--Sobic007G211200 Sobic008G150500 Sobic008G150500 Sobic001G046400--Sobic008G150500 Sobic006G187000 Sobic006G187000 Sobic001G046400--Sobic006G187000 Sobic004G302700 Sobic004G302700 Sobic001G046400--Sobic004G302700 Sobic001G046400--Sobic004G342000 Sobic002G337600 Sobic002G337600 Sobic001G046400--Sobic002G337600 Sobic003G016200 Sobic003G016200 Sobic001G046400--Sobic003G016200 Sobic004G211700 Sobic004G211700 Sobic001G046400--Sobic004G211700 Sobic003G283900 Sobic003G283900 Sobic001G046400--Sobic003G283900 Sobic005G218000 Sobic005G218000 Sobic004G342000--Sobic005G218000 Sobic001G341700 Sobic001G341700 Sobic004G342000--Sobic001G341700 Sobic004G342000--Sobic004G211700 Sobic002G029700 Sobic002G029700 Sobic004G342000--Sobic002G029700 Sobic007G076100 Sobic007G076100 Sobic004G342000--Sobic007G076100 Sobic008G012600 Sobic008G012600 Sobic004G342000--Sobic008G012600 Sobic002G416400 Sobic002G416400 Sobic004G342000--Sobic002G416400 Sobic006G151800 Sobic006G151800 Sobic004G342000--Sobic006G151800 Sobic006G089700 Sobic006G089700 Sobic004G342000--Sobic006G089700 Sobic001G119200--Sobic002G011000 Sobic009G254500 Sobic009G254500 Sobic001G119200--Sobic009G254500 Sobic001G119200--Sobic010G077700 Sobic006G160800 Sobic006G160800 Sobic001G119200--Sobic006G160800 Sobic001G119200--Sobic004G302700 Sobic009G141300 Sobic009G141300 Sobic001G119200--Sobic009G141300 Sobic001G119200--Sobic001G046400 Sobic001G119200--Sobic004G342000 Sobic001G438500 Sobic001G438500 Sobic001G119200--Sobic001G438500 Sobic007G211200--Sobic001G046400 Sobic004G357000 Sobic004G357000 Sobic007G211200--Sobic004G357000 Sobic003G089300 Sobic003G089300 Sobic007G211200--Sobic003G089300 Sobic002G032500 Sobic002G032500 Sobic007G211200--Sobic002G032500 Sobic007G211200--Sobic004G211700 Sobic007G211200--Sobic004G342000 Sobic007G211200--Sobic003G113500 Sobic001G135600 Sobic001G135600 Sobic007G211200--Sobic001G135600 Sobic007G211200--Sobic002G337600 Sobic007G115400--Sobic004G211700 Sobic007G115400--Sobic004G302700 Sobic007G115400--Sobic001G046400 Sobic009G023900 Sobic009G023900 Sobic007G115400--Sobic009G023900 Sobic006G117900 Sobic006G117900 Sobic007G115400--Sobic006G117900 Sobic005G110900 Sobic005G110900 Sobic007G115400--Sobic005G110900 Sobic007G115400--Sobic003G283900 Sobic004G211800 Sobic004G211800 Sobic007G115400--Sobic004G211800 Sobic007G115400--Sobic001G341700 Sobic001G199400 Sobic001G199400 Sobic003G113500--Sobic001G199400 Sobic003G113500--Sobic004G357000 Sobic004G248100 Sobic004G248100 Sobic003G113500--Sobic004G248100 Sobic003G113500--Sobic004G211700 Sobic003G027100 Sobic003G027100 Sobic003G113500--Sobic003G027100 Sobic010G078700 Sobic010G078700 Sobic003G113500--Sobic010G078700 Sobic003G070600 Sobic003G070600 Sobic003G113500--Sobic003G070600 Sobic003G113500--Sobic004G342000 Sobic003G113500--Sobic002G032500 Sobic002G011000--Sobic009G254500 Sobic002G011000--Sobic001G119200 Sobic002G011000--Sobic006G160800 Sobic002G011000--Sobic009G141300 Sobic005G042200 Sobic005G042200 Sobic002G011000--Sobic005G042200 Sobic004G062100 Sobic004G062100 Sobic002G011000--Sobic004G062100 Sobic002G011000--Sobic001G438500 Sobic002G011000--Sobic002G029700 Sobic002G011000--Sobic008G012600 Sobic010G077700--Sobic001G119200 Sobic010G077700--Sobic009G254500 Sobic002G068400 Sobic002G068400 Sobic010G077700--Sobic002G068400 Sobic010G077700--Sobic004G342000 Sobic004G215000 Sobic004G215000 Sobic010G077700--Sobic004G215000 Sobic010G077700--Sobic002G011000 Sobic010G077700--Sobic001G438500 Sobic010G065700 Sobic010G065700 Sobic010G077700--Sobic010G065700 Sobic001G179400 Sobic001G179400 Sobic010G077700--Sobic001G179400 Sobic007G094200 Sobic007G094200 Sobic002G186800--Sobic007G094200 Sobic003G178500 Sobic003G178500 Sobic002G186800--Sobic003G178500 Sobic002G186800--Sobic004G248100 Sobic002G186800--Sobic004G342000 Sobic002G186800--Sobic002G032500 Sobic002G186800--Sobic002G068400 Sobic002G186800--Sobic002G416400 Sobic002G186800--Sobic004G211700 Sobic002G186800--Sobic009G254500
Octagon: transcription factors


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