Gene annotation
Transcriptome id Sobic.002G029700.1
Synonym Sb02g002650, LSH3
Functional annotation DUF640 domain containing protein, putative, expressed
UniProt C5X9F3 , D1MYE1
Pfam PF04852
Panther DB PTHR31165 PTHR31165:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os07g04670.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a019050 , Zm00025a041930 , Zm00025a006596 , Zm00025a017626 , Zm00025a037663 , Zm00025a044984 , Zm00025a037773 , Zm00025a051795
Brachypodium KQJ93496 , KQK21000
Barley HORVU1Hr1G070480.1 , HORVU1Hr1G070480.2 , HORVU1Hr1G041240.2 , HORVU1Hr1G041240.1 , HORVU1Hr1G041240.6 , HORVU1Hr1G041240.7 , HORVU1Hr1G041240.4 , HORVU1Hr1G041240.5 , HORVU2Hr1G060890.5 , HORVU2Hr1G060890.4 , HORVU2Hr1G060890.7 , HORVU2Hr1G060890.6 , HORVU2Hr1G060890.3 , HORVU2Hr1G060890.2 , HORVU2Hr1G060890.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G151800 OsRR5 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
2 Sobic.006G098300 alpha/beta hydrolase fold, putative, expressed -
3 Sobic.001G334501 - K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
4 Sobic.005G089700 expressed protein -
5 Sobic.005G226500 thaumatin family domain containing protein, expressed -
6 Sobic.007G048500 CXXC1 - Cysteine-rich protein with CXXC and CXXXC motifs precursor, putative, expressed -
7 Sobic.009G075000 expressed protein -
8 Sobic.007G098600 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.003G088200 dihydroflavonol-4-reductase, putative, expressed -
10 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
11 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
12 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
13 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
14 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
15 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
16 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
17 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
18 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
19 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
20 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G029700 Sobic002G029700 Sobic006G151800 Sobic006G151800 Sobic002G029700--Sobic006G151800 Sobic006G098300 Sobic006G098300 Sobic002G029700--Sobic006G098300 Sobic001G334501 Sobic001G334501 Sobic002G029700--Sobic001G334501 Sobic005G089700 Sobic005G089700 Sobic002G029700--Sobic005G089700 Sobic005G226500 Sobic005G226500 Sobic002G029700--Sobic005G226500 Sobic007G048500 Sobic007G048500 Sobic002G029700--Sobic007G048500 Sobic009G075000 Sobic009G075000 Sobic002G029700--Sobic009G075000 Sobic007G098600 Sobic007G098600 Sobic002G029700--Sobic007G098600 Sobic003G088200 Sobic003G088200 Sobic002G029700--Sobic003G088200 Sobic006G151800--Sobic002G029700 Sobic006G151800--Sobic001G334501 Sobic006G151800--Sobic006G098300 Sobic007G037400 Sobic007G037400 Sobic006G151800--Sobic007G037400 Sobic007G107500 Sobic007G107500 Sobic006G151800--Sobic007G107500 Sobic006G151800--Sobic003G088200 Sobic006G151800--Sobic007G098600 Sobic001G133200 Sobic001G133200 Sobic006G151800--Sobic001G133200 Sobic002G270400 Sobic002G270400 Sobic006G098300--Sobic002G270400 Sobic006G006900 Sobic006G006900 Sobic006G098300--Sobic006G006900 Sobic006G098300--Sobic007G098600 Sobic006G098300--Sobic001G133200 Sobic002G399600 Sobic002G399600 Sobic001G334501--Sobic002G399600 Sobic001G334501--Sobic002G270400 Sobic001G334501--Sobic007G037400 Sobic001G334501--Sobic007G107500 Sobic010G187400 Sobic010G187400 Sobic001G334501--Sobic010G187400 Sobic001G334501--Sobic006G006900 Sobic001G334501--Sobic005G226500 Sobic001G334501--Sobic007G098600 Sobic001G334501--Sobic001G133200 Sobic005G089700--Sobic001G133200 Sobic005G226500--Sobic007G107500 Sobic005G226500--Sobic007G037400 Sobic005G226500--Sobic006G006900 Sobic005G226500--Sobic002G270400 Sobic005G226500--Sobic002G399600 Sobic005G226500--Sobic007G098600 Sobic005G226500--Sobic001G133200 Sobic007G048500--Sobic005G226500 Sobic007G048500--Sobic007G098600 Sobic007G048500--Sobic001G133200 Sobic010G259400 Sobic010G259400 Sobic009G075000--Sobic010G259400 Sobic003G016000 Sobic003G016000 Sobic009G075000--Sobic003G016000 Sobic009G075000--Sobic003G088200 Sobic009G074900 Sobic009G074900 Sobic009G075000--Sobic009G074900 Sobic003G263800 Sobic003G263800 Sobic009G075000--Sobic003G263800 Sobic009G075000--Sobic001G133200 Sobic007G098600--Sobic001G133200 Sobic003G088200--Sobic003G263800 Sobic002G427550 Sobic002G427550 Sobic003G088200--Sobic002G427550 Sobic003G088200--Sobic001G133200
Octagon: transcription factors


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