Gene annotation
Transcriptome id Sobic.001G299600.1
Synonym GATA4, Sb01g029170
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt C5WSD6
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF172
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G60530 : GATA transcription factor 4
RAP-DB (Rice) LOC_Os10g40810.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008505 , Zm00025a051974 , Zm00025a003323
Brachypodium KQK24170 , KQJ97775
Barley HORVU1Hr1G056280.2 , HORVU1Hr1G056280.1 , HORVU4Hr1G088280.8 , HORVU4Hr1G088280.1 , HORVU4Hr1G088280.2 , HORVU4Hr1G088280.3 , HORVU4Hr1G088280.4
Wheat TraesCS1B02G234800 , TraesCS4D02G362800 , TraesCS1D02G223200 , TraesCS5A02G538600 , TraesCS1A02G221600 , TraesCS4B02G374400
Populus PNT49662


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cDNA sequences
Sobic.001G299600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G180200 NC domain-containing protein, putative, expressed -
2 Sobic.010G014500 aspartic protease, putative, expressed -
3 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
4 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.005G199700 leucine-rich repeat family protein, putative, expressed -
6 Sobic.001G199400 monocopper oxidase, putative, expressed -
7 Sobic.001G155700 expansin precursor, putative, expressed -
8 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
9 Sobic.001G493900 beta-galactosidase, putative, expressed -
10 Sobic.002G360500 expressed protein -
11 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
12 Sobic.003G307200 expressed protein -
13 Sobic.010G111200 "GASR7(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659934)@GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
14 Sobic.001G393200 expressed protein -
15 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
16 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
17 Sobic.009G217800 - -
18 Sobic.005G140001 - K08235: xyloglucan:xyloglucosyl transferase
19 Sobic.010G014700 expressed protein -
20 Sobic.008G114900 rhoGAP domain containing protein, expressed -


Gene co-expression network
sample Sobic001G299600 Sobic001G299600 Sobic007G180200 Sobic007G180200 Sobic001G299600--Sobic007G180200 Sobic010G014500 Sobic010G014500 Sobic001G299600--Sobic010G014500 Sobic001G488900 Sobic001G488900 Sobic001G299600--Sobic001G488900 Sobic003G338700 Sobic003G338700 Sobic001G299600--Sobic003G338700 Sobic005G199700 Sobic005G199700 Sobic001G299600--Sobic005G199700 Sobic001G199400 Sobic001G199400 Sobic001G299600--Sobic001G199400 Sobic001G155700 Sobic001G155700 Sobic001G299600--Sobic001G155700 Sobic007G165800 Sobic007G165800 Sobic001G299600--Sobic007G165800 Sobic001G493900 Sobic001G493900 Sobic001G299600--Sobic001G493900 Sobic007G180200--Sobic005G199700 Sobic007G180200--Sobic007G165800 Sobic007G180200--Sobic001G299600 Sobic007G180200--Sobic003G338700 Sobic003G027100 Sobic003G027100 Sobic007G180200--Sobic003G027100 Sobic009G146700 Sobic009G146700 Sobic007G180200--Sobic009G146700 Sobic007G180200--Sobic001G199400 Sobic010G014700 Sobic010G014700 Sobic007G180200--Sobic010G014700 Sobic010G235300 Sobic010G235300 Sobic007G180200--Sobic010G235300 Sobic010G014500--Sobic003G338700 Sobic010G077000 Sobic010G077000 Sobic010G014500--Sobic010G077000 Sobic010G014500--Sobic005G199700 Sobic003G019900 Sobic003G019900 Sobic010G014500--Sobic003G019900 Sobic010G014500--Sobic010G014700 Sobic010G014500--Sobic009G146700 Sobic010G014500--Sobic001G299600 Sobic010G014500--Sobic007G165800 Sobic010G014500--Sobic007G180200 Sobic001G488900--Sobic001G299600 Sobic010G010900 Sobic010G010900 Sobic001G488900--Sobic010G010900 Sobic001G488900--Sobic007G180200 Sobic001G488900--Sobic001G199400 Sobic001G488900--Sobic005G199700 Sobic003G356600 Sobic003G356600 Sobic001G488900--Sobic003G356600 Sobic003G052000 Sobic003G052000 Sobic001G488900--Sobic003G052000 Sobic001G488900--Sobic009G146700 Sobic006G219500 Sobic006G219500 Sobic001G488900--Sobic006G219500 Sobic003G338700--Sobic009G146700 Sobic003G338700--Sobic005G199700 Sobic003G338700--Sobic010G014500 Sobic003G338700--Sobic010G014700 Sobic002G363300 Sobic002G363300 Sobic003G338700--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic003G338700--Sobic001G286700 Sobic003G338700--Sobic007G180200 Sobic003G338700--Sobic001G199400 Sobic003G338700--Sobic003G019900 Sobic005G199700--Sobic009G146700 Sobic005G199700--Sobic003G338700 Sobic005G199700--Sobic002G363300 Sobic005G199700--Sobic007G180200 Sobic005G199700--Sobic001G286700 Sobic006G273600 Sobic006G273600 Sobic005G199700--Sobic006G273600 Sobic003G010700 Sobic003G010700 Sobic005G199700--Sobic003G010700 Sobic005G199700--Sobic003G027100 Sobic005G199700--Sobic010G014700 Sobic001G199400--Sobic010G014700 Sobic003G113500 Sobic003G113500 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic010G078700 Sobic010G078700 Sobic001G199400--Sobic010G078700 Sobic003G070600 Sobic003G070600 Sobic001G199400--Sobic003G070600 Sobic001G199400--Sobic007G180200 Sobic001G074000 Sobic001G074000 Sobic001G199400--Sobic001G074000 Sobic002G319300 Sobic002G319300 Sobic001G155700--Sobic002G319300 Sobic008G114900 Sobic008G114900 Sobic001G155700--Sobic008G114900 Sobic001G155700--Sobic001G493900 Sobic010G192500 Sobic010G192500 Sobic001G155700--Sobic010G192500 Sobic001G155700--Sobic006G219500 Sobic002G313000 Sobic002G313000 Sobic001G155700--Sobic002G313000 Sobic003G089300 Sobic003G089300 Sobic001G155700--Sobic003G089300 Sobic002G394500 Sobic002G394500 Sobic001G155700--Sobic002G394500 Sobic007G160300 Sobic007G160300 Sobic001G155700--Sobic007G160300 Sobic004G274600 Sobic004G274600 Sobic007G165800--Sobic004G274600 Sobic001G434100 Sobic001G434100 Sobic007G165800--Sobic001G434100 Sobic007G165800--Sobic007G180200 Sobic007G165800--Sobic001G286700 Sobic007G165800--Sobic003G027100 Sobic007G165800--Sobic010G235300 Sobic007G165800--Sobic001G199400 Sobic007G170100 Sobic007G170100 Sobic007G165800--Sobic007G170100 Sobic007G165800--Sobic003G338700 Sobic004G267600 Sobic004G267600 Sobic001G493900--Sobic004G267600 Sobic001G493900--Sobic003G019900 Sobic010G129700 Sobic010G129700 Sobic001G493900--Sobic010G129700 Sobic001G493900--Sobic002G319300 Sobic001G493900--Sobic008G114900 Sobic001G493900--Sobic001G155700 Sobic001G493900--Sobic010G192500 Sobic002G417000 Sobic002G417000 Sobic001G493900--Sobic002G417000 Sobic001G493900--Sobic003G338700
Octagon: transcription factors


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