Gene annotation
Transcriptome id Sobic.010G111200.1
Synonym Sb10g009640
Functional annotation "GASR7(Ortholog in rice:Huang et al., 2012)" (PubMedID : 31659934)
GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed
UniProt C5Z8E8
Pfam PF02704
Panther DB PTHR23201 PTHR23201:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15230 : GAST1 protein homolog 4
RAP-DB (Rice) LOC_Os06g15620.1 : GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed
MaizeGDB (Corn) Zm00025a050408 , Zm00025a043506 , Zm00025a053745
Brachypodium PNT64563 , KQJ90233 , PNT76076
Barley HORVU5Hr1G065670.1 , HORVU5Hr1G065670.2 , HORVU7Hr1G042390.3 , HORVU7Hr1G042390.2 , HORVU7Hr1G042390.7 , HORVU7Hr1G042390.6 , HORVU7Hr1G042390.5 , HORVU7Hr1G042390.4
Wheat TraesCS7A02G208100 , TraesCS7D02G210500 , TraesCS7B02G115300
Populus PNS95865


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G299600 GATA zinc finger domain containing protein, expressed -
2 Sobic.010G216600 expressed protein -
3 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
4 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
6 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
8 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
9 Sobic.002G394500 proline-rich family protein, putative, expressed -
10 Sobic.003G419700 classical arabinogalactan protein 26 precursor, putative, expressed -
11 Sobic.003G013000 inactive receptor kinase At2g26730 precursor, putative, expressed -
12 Sobic.001G140600 expressed protein -
13 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
14 Sobic.003G102000 expressed protein -
15 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
16 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
17 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
18 Sobic.006G134200 expressed protein -
19 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
20 Sobic.006G214000 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1


Gene co-expression network
sample Sobic010G111200 Sobic010G111200 Sobic001G299600 Sobic001G299600 Sobic010G111200--Sobic001G299600 Sobic010G216600 Sobic010G216600 Sobic010G111200--Sobic010G216600 Sobic001G540900 Sobic001G540900 Sobic010G111200--Sobic001G540900 Sobic004G313200 Sobic004G313200 Sobic010G111200--Sobic004G313200 Sobic002G222500 Sobic002G222500 Sobic010G111200--Sobic002G222500 Sobic002G426800 Sobic002G426800 Sobic010G111200--Sobic002G426800 Sobic003G260700 Sobic003G260700 Sobic010G111200--Sobic003G260700 Sobic003G328500 Sobic003G328500 Sobic010G111200--Sobic003G328500 Sobic002G394500 Sobic002G394500 Sobic010G111200--Sobic002G394500 Sobic007G180200 Sobic007G180200 Sobic001G299600--Sobic007G180200 Sobic010G014500 Sobic010G014500 Sobic001G299600--Sobic010G014500 Sobic001G488900 Sobic001G488900 Sobic001G299600--Sobic001G488900 Sobic003G338700 Sobic003G338700 Sobic001G299600--Sobic003G338700 Sobic005G199700 Sobic005G199700 Sobic001G299600--Sobic005G199700 Sobic001G199400 Sobic001G199400 Sobic001G299600--Sobic001G199400 Sobic001G155700 Sobic001G155700 Sobic001G299600--Sobic001G155700 Sobic007G165800 Sobic007G165800 Sobic001G299600--Sobic007G165800 Sobic001G493900 Sobic001G493900 Sobic001G299600--Sobic001G493900 Sobic003G338200 Sobic003G338200 Sobic010G216600--Sobic003G338200 Sobic004G170900 Sobic004G170900 Sobic010G216600--Sobic004G170900 Sobic007G225400 Sobic007G225400 Sobic010G216600--Sobic007G225400 Sobic010G216600--Sobic010G111200 Sobic002G419200 Sobic002G419200 Sobic010G216600--Sobic002G419200 Sobic003G277200 Sobic003G277200 Sobic010G216600--Sobic003G277200 Sobic002G016400 Sobic002G016400 Sobic010G216600--Sobic002G016400 Sobic003G116100 Sobic003G116100 Sobic010G216600--Sobic003G116100 Sobic001G382700 Sobic001G382700 Sobic010G216600--Sobic001G382700 Sobic004G257600 Sobic004G257600 Sobic001G540900--Sobic004G257600 Sobic007G000500 Sobic007G000500 Sobic001G540900--Sobic007G000500 Sobic001G140600 Sobic001G140600 Sobic001G540900--Sobic001G140600 Sobic001G540900--Sobic003G260700 Sobic004G271300 Sobic004G271300 Sobic001G540900--Sobic004G271300 Sobic001G177900 Sobic001G177900 Sobic001G540900--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic001G540900--Sobic002G313000 Sobic003G444100 Sobic003G444100 Sobic001G540900--Sobic003G444100 Sobic007G168900 Sobic007G168900 Sobic001G540900--Sobic007G168900 Sobic001G083500 Sobic001G083500 Sobic004G313200--Sobic001G083500 Sobic004G313200--Sobic002G222500 Sobic001G108100 Sobic001G108100 Sobic004G313200--Sobic001G108100 Sobic004G313200--Sobic001G140600 Sobic009G146700 Sobic009G146700 Sobic004G313200--Sobic009G146700 Sobic003G102000 Sobic003G102000 Sobic004G313200--Sobic003G102000 Sobic010G241100 Sobic010G241100 Sobic004G313200--Sobic010G241100 Sobic006G219500 Sobic006G219500 Sobic004G313200--Sobic006G219500 Sobic007G116800 Sobic007G116800 Sobic004G313200--Sobic007G116800 Sobic001G091500 Sobic001G091500 Sobic002G222500--Sobic001G091500 Sobic008G114900 Sobic008G114900 Sobic002G222500--Sobic008G114900 Sobic010G269700 Sobic010G269700 Sobic002G222500--Sobic010G269700 Sobic003G387700 Sobic003G387700 Sobic002G222500--Sobic003G387700 Sobic002G222500--Sobic010G241100 Sobic002G222500--Sobic003G444100 Sobic002G222500--Sobic004G313200 Sobic002G222500--Sobic006G219500 Sobic003G032200 Sobic003G032200 Sobic002G222500--Sobic003G032200 Sobic009G181500 Sobic009G181500 Sobic002G426800--Sobic009G181500 Sobic002G426800--Sobic001G091500 Sobic005G144600 Sobic005G144600 Sobic002G426800--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic002G426800--Sobic004G047100 Sobic002G426800--Sobic003G260700 Sobic001G078600 Sobic001G078600 Sobic002G426800--Sobic001G078600 Sobic003G314900 Sobic003G314900 Sobic002G426800--Sobic003G314900 Sobic002G426800--Sobic003G444100 Sobic010G105400 Sobic010G105400 Sobic002G426800--Sobic010G105400 Sobic001G170800 Sobic001G170800 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic004G339500 Sobic004G339500 Sobic003G260700--Sobic004G339500 Sobic001G398400 Sobic001G398400 Sobic003G260700--Sobic001G398400 Sobic004G198100 Sobic004G198100 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic008G006800 Sobic008G006800 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000 Sobic006G134200 Sobic006G134200 Sobic003G328500--Sobic006G134200 Sobic003G328500--Sobic001G177900 Sobic001G075400 Sobic001G075400 Sobic003G328500--Sobic001G075400 Sobic007G207700 Sobic007G207700 Sobic003G328500--Sobic007G207700 Sobic003G328500--Sobic003G387700 Sobic003G328500--Sobic004G257600 Sobic003G328500--Sobic003G260700 Sobic003G328500--Sobic005G144600 Sobic003G328500--Sobic002G426800 Sobic002G394500--Sobic001G155700 Sobic002G394500--Sobic006G219500 Sobic002G394500--Sobic010G241100 Sobic006G105600 Sobic006G105600 Sobic002G394500--Sobic006G105600 Sobic002G319300 Sobic002G319300 Sobic002G394500--Sobic002G319300 Sobic010G192500 Sobic010G192500 Sobic002G394500--Sobic010G192500 Sobic002G394500--Sobic003G260700 Sobic002G394500--Sobic008G114900 Sobic002G394500--Sobic002G313000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.