Gene annotation
Transcriptome id Sobic.006G214000.1
Synonym Sb06g028430, CMT3
Functional annotation expressed protein
UniProt C5YG04
Pfam PF01426 PF00385 PF00145
Panther DB PTHR10629 PTHR10629:SF28
NCBI CDD -
KEGG Orthology K00558; DNMT1, DNA (cytosine-5)-methyltransferase 1
Gene Ontology GO:0003682; chromatin binding


Orthologs (automatic annotation)
TAIR AT1G69770 : chromomethylase 3
RAP-DB (Rice) LOC_Os03g12570.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
2 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
3 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
4 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
5 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
6 Sobic.001G075400 expressed protein -
7 Sobic.003G294500 dynamin family protein, putative, expressed -
8 Sobic.003G387600 expressed protein K10750: chromatin assembly factor 1 subunit A
9 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
10 Sobic.003G041700 DNA mismatch repair protein MSH6-2, putative, expressed K08737: DNA mismatch repair protein MSH6
11 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
12 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
14 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
15 Sobic.010G111200 "GASR7(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659934)@GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
17 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
18 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
19 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
20 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic006G214000 Sobic006G214000 Sobic001G177900 Sobic001G177900 Sobic006G214000--Sobic001G177900 Sobic006G029300 Sobic006G029300 Sobic006G214000--Sobic006G029300 Sobic010G147700 Sobic010G147700 Sobic006G214000--Sobic010G147700 Sobic007G168900 Sobic007G168900 Sobic006G214000--Sobic007G168900 Sobic001G540900 Sobic001G540900 Sobic006G214000--Sobic001G540900 Sobic001G075400 Sobic001G075400 Sobic006G214000--Sobic001G075400 Sobic003G294500 Sobic003G294500 Sobic006G214000--Sobic003G294500 Sobic003G387600 Sobic003G387600 Sobic006G214000--Sobic003G387600 Sobic003G314900 Sobic003G314900 Sobic006G214000--Sobic003G314900 Sobic001G177900--Sobic007G168900 Sobic001G177900--Sobic003G314900 Sobic005G000500 Sobic005G000500 Sobic001G177900--Sobic005G000500 Sobic003G260700 Sobic003G260700 Sobic001G177900--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic001G177900--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic001G177900--Sobic010G008900 Sobic004G339500 Sobic004G339500 Sobic001G177900--Sobic004G339500 Sobic005G144600 Sobic005G144600 Sobic001G177900--Sobic005G144600 Sobic001G177900--Sobic003G294500 Sobic006G029300--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic006G029300--Sobic009G087000 Sobic006G029300--Sobic007G168900 Sobic003G369200 Sobic003G369200 Sobic006G029300--Sobic003G369200 Sobic006G029300--Sobic003G294500 Sobic003G201000 Sobic003G201000 Sobic006G029300--Sobic003G201000 Sobic001G029800 Sobic001G029800 Sobic006G029300--Sobic001G029800 Sobic006G029300--Sobic005G144600 Sobic005G110535 Sobic005G110535 Sobic006G029300--Sobic005G110535 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic010G147700--Sobic007G168900 Sobic008G129200 Sobic008G129200 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic003G183700 Sobic003G183700 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic004G271300 Sobic004G271300 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic007G168900--Sobic010G008900 Sobic007G168900--Sobic010G147700 Sobic004G257600 Sobic004G257600 Sobic001G540900--Sobic004G257600 Sobic007G000500 Sobic007G000500 Sobic001G540900--Sobic007G000500 Sobic001G140600 Sobic001G140600 Sobic001G540900--Sobic001G140600 Sobic001G540900--Sobic003G260700 Sobic001G540900--Sobic004G271300 Sobic001G540900--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic001G540900--Sobic002G313000 Sobic003G444100 Sobic003G444100 Sobic001G540900--Sobic003G444100 Sobic001G540900--Sobic007G168900 Sobic003G328500 Sobic003G328500 Sobic001G075400--Sobic003G328500 Sobic004G077100 Sobic004G077100 Sobic001G075400--Sobic004G077100 Sobic001G075400--Sobic001G177900 Sobic006G134200 Sobic006G134200 Sobic001G075400--Sobic006G134200 Sobic009G233500 Sobic009G233500 Sobic001G075400--Sobic009G233500 Sobic007G207700 Sobic007G207700 Sobic001G075400--Sobic007G207700 Sobic001G075400--Sobic002G313000 Sobic005G016300 Sobic005G016300 Sobic001G075400--Sobic005G016300 Sobic001G131300 Sobic001G131300 Sobic001G075400--Sobic001G131300 Sobic003G294500--Sobic005G144600 Sobic003G294500--Sobic007G168900 Sobic003G294500--Sobic003G314900 Sobic003G294500--Sobic001G177900 Sobic003G294500--Sobic005G000500 Sobic006G144300 Sobic006G144300 Sobic003G294500--Sobic006G144300 Sobic003G294500--Sobic010G008900 Sobic003G294500--Sobic001G029800 Sobic003G294500--Sobic010G147700 Sobic003G387600--Sobic006G214000 Sobic003G041700 Sobic003G041700 Sobic003G387600--Sobic003G041700 Sobic003G387600--Sobic006G029300 Sobic003G387600--Sobic001G075400 Sobic010G067900 Sobic010G067900 Sobic003G387600--Sobic010G067900 Sobic003G387600--Sobic008G129200 Sobic003G387600--Sobic004G077100 Sobic003G387600--Sobic010G147700 Sobic003G387600--Sobic001G131300 Sobic003G314900--Sobic005G000500 Sobic003G314900--Sobic007G168900 Sobic003G314900--Sobic001G177900 Sobic003G314900--Sobic010G008900 Sobic003G314900--Sobic005G144600 Sobic003G314900--Sobic003G294500 Sobic003G314900--Sobic003G260700 Sobic003G314900--Sobic001G170800 Sobic003G314900--Sobic004G271300
Octagon: transcription factors


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