Gene annotation
Transcriptome id Sobic.004G045500.1
Synonym Sb04g003910
Functional annotation phytosulfokine receptor precursor, putative, expressed
UniProt C5XVB5
Pfam PF08263 PF00560 PF13855
Panther DB PTHR27000 PTHR27000:SF69
NCBI CDD KOG0472; Leucine-rich repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G72300 : Leucine-rich receptor-like protein kinase family protein
RAP-DB (Rice) LOC_Os02g06180.1 : phytosulfokine receptor precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G342000 WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
2 Sobic.010G027700 OsSAUR24 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
3 Sobic.001G179400 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
4 Sobic.002G068400 - -
5 Sobic.005G118700 expressed protein -
6 Sobic.003G120600 transmembrane protein 136, putative, expressed -
7 Sobic.005G218000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
8 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
9 Sobic.005G055400 amidase family protein, putative, expressed -
10 Sobic.007G094200 expressed protein -
11 Sobic.004G215000 uncharacterized protein At4g06744 precursor, putative, expressed -
12 Sobic.002G416400 basic helix-loop-helix domain containing protein, expressed -
13 Sobic.007G076100 transferase family protein, putative, expressed -
14 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
15 Sobic.006G185600 HOTHEAD precursor, putative, expressed K00108: betA, choline dehydrogenase
16 Sobic.004G211700 - -
17 Sobic.007G125400 lysM domain containing protein, putative -
18 Sobic.006G089700 LTPL94 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.006G219100 expressed protein -
20 Sobic.003G178500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase


Gene co-expression network
sample Sobic004G045500 Sobic004G045500 Sobic004G342000 Sobic004G342000 Sobic004G045500--Sobic004G342000 Sobic010G027700 Sobic010G027700 Sobic004G045500--Sobic010G027700 Sobic001G179400 Sobic001G179400 Sobic004G045500--Sobic001G179400 Sobic002G068400 Sobic002G068400 Sobic004G045500--Sobic002G068400 Sobic005G118700 Sobic005G118700 Sobic004G045500--Sobic005G118700 Sobic003G120600 Sobic003G120600 Sobic004G045500--Sobic003G120600 Sobic005G218000 Sobic005G218000 Sobic004G045500--Sobic005G218000 Sobic002G312200 Sobic002G312200 Sobic004G045500--Sobic002G312200 Sobic005G055400 Sobic005G055400 Sobic004G045500--Sobic005G055400 Sobic004G342000--Sobic005G218000 Sobic001G341700 Sobic001G341700 Sobic004G342000--Sobic001G341700 Sobic004G211700 Sobic004G211700 Sobic004G342000--Sobic004G211700 Sobic002G029700 Sobic002G029700 Sobic004G342000--Sobic002G029700 Sobic007G076100 Sobic007G076100 Sobic004G342000--Sobic007G076100 Sobic008G012600 Sobic008G012600 Sobic004G342000--Sobic008G012600 Sobic002G416400 Sobic002G416400 Sobic004G342000--Sobic002G416400 Sobic006G151800 Sobic006G151800 Sobic004G342000--Sobic006G151800 Sobic006G089700 Sobic006G089700 Sobic004G342000--Sobic006G089700 Sobic010G027700--Sobic002G068400 Sobic004G215000 Sobic004G215000 Sobic010G027700--Sobic004G215000 Sobic001G438500 Sobic001G438500 Sobic010G027700--Sobic001G438500 Sobic007G125400 Sobic007G125400 Sobic010G027700--Sobic007G125400 Sobic010G027700--Sobic003G120600 Sobic010G027700--Sobic001G179400 Sobic007G094200 Sobic007G094200 Sobic010G027700--Sobic007G094200 Sobic002G023700 Sobic002G023700 Sobic010G027700--Sobic002G023700 Sobic009G037300 Sobic009G037300 Sobic010G027700--Sobic009G037300 Sobic001G179400--Sobic002G068400 Sobic001G179400--Sobic004G215000 Sobic001G179400--Sobic004G342000 Sobic001G179400--Sobic003G120600 Sobic001G179400--Sobic010G027700 Sobic001G179400--Sobic007G125400 Sobic004G227900 Sobic004G227900 Sobic001G179400--Sobic004G227900 Sobic001G179400--Sobic007G094200 Sobic002G179200 Sobic002G179200 Sobic001G179400--Sobic002G179200 Sobic002G068400--Sobic010G027700 Sobic008G035400 Sobic008G035400 Sobic002G068400--Sobic008G035400 Sobic002G068400--Sobic001G179400 Sobic002G068400--Sobic004G215000 Sobic002G068400--Sobic004G342000 Sobic010G077700 Sobic010G077700 Sobic002G068400--Sobic010G077700 Sobic002G382500 Sobic002G382500 Sobic002G068400--Sobic002G382500 Sobic002G068400--Sobic007G094200 Sobic002G068400--Sobic004G045500 Sobic005G118700--Sobic006G089700 Sobic006G185600 Sobic006G185600 Sobic005G118700--Sobic006G185600 Sobic005G179800 Sobic005G179800 Sobic005G118700--Sobic005G179800 Sobic008G013400 Sobic008G013400 Sobic005G118700--Sobic008G013400 Sobic004G202800 Sobic004G202800 Sobic005G118700--Sobic004G202800 Sobic005G118700--Sobic002G312200 Sobic005G180000 Sobic005G180000 Sobic005G118700--Sobic005G180000 Sobic006G006800 Sobic006G006800 Sobic005G118700--Sobic006G006800 Sobic010G236000 Sobic010G236000 Sobic005G118700--Sobic010G236000 Sobic003G120600--Sobic007G125400 Sobic003G004900 Sobic003G004900 Sobic003G120600--Sobic003G004900 Sobic008G004200 Sobic008G004200 Sobic003G120600--Sobic008G004200 Sobic003G120600--Sobic002G179200 Sobic003G120600--Sobic001G438500 Sobic003G120600--Sobic001G179400 Sobic006G092300 Sobic006G092300 Sobic003G120600--Sobic006G092300 Sobic010G065700 Sobic010G065700 Sobic003G120600--Sobic010G065700 Sobic003G120600--Sobic008G012600 Sobic005G218000--Sobic007G076100 Sobic005G218000--Sobic001G341700 Sobic005G218000--Sobic002G312200 Sobic005G218000--Sobic006G092300 Sobic004G318800 Sobic004G318800 Sobic005G218000--Sobic004G318800 Sobic006G079500 Sobic006G079500 Sobic005G218000--Sobic006G079500 Sobic001G491400 Sobic001G491400 Sobic005G218000--Sobic001G491400 Sobic001G266100 Sobic001G266100 Sobic005G218000--Sobic001G266100 Sobic010G049600 Sobic010G049600 Sobic005G218000--Sobic010G049600 Sobic002G312200--Sobic005G218000 Sobic002G312200--Sobic007G076100 Sobic002G312200--Sobic001G341700 Sobic002G312200--Sobic004G318800 Sobic002G312200--Sobic006G089700 Sobic002G312200--Sobic005G118700 Sobic002G312200--Sobic006G092300 Sobic002G312300 Sobic002G312300 Sobic002G312200--Sobic002G312300 Sobic003G178500 Sobic003G178500 Sobic002G312200--Sobic003G178500 Sobic004G041700 Sobic004G041700 Sobic005G055400--Sobic004G041700 Sobic005G055400--Sobic007G076100 Sobic005G055400--Sobic005G218000 Sobic005G055400--Sobic003G178500 Sobic005G055400--Sobic004G318800 Sobic005G055400--Sobic002G312200 Sobic005G055400--Sobic003G120600 Sobic005G055400--Sobic004G342000 Sobic005G055400--Sobic001G341700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.