Gene annotation
Transcriptome id Sobic.007G125400.1
Synonym Sb07g020210
Functional annotation lysM domain containing protein, putative
UniProt C5YKV2
Pfam PF01476
Panther DB PTHR34997 PTHR34997:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g57400.1 : lysM domain containing protein, putative
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G120600 transmembrane protein 136, putative, expressed -
2 Sobic.008G004200 MYB family transcription factor, putative, expressed -
3 Sobic.001G266100 POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
4 Sobic.008G012600 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
5 Sobic.002G179200 DUF623 domain containing protein, expressed -
6 Sobic.003G011700 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
7 Sobic.010G027700 OsSAUR24 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
8 Sobic.002G047366 - -
9 Sobic.006G151800 OsRR5 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
10 Sobic.001G102600 regulatory protein, putative, expressed -
11 Sobic.010G049600 expressed protein -
12 Sobic.001G491400 cytochrome P450, putative, expressed -
13 Sobic.006G092300 ZOS4-06 - C2H2 zinc finger protein, expressed -
14 Sobic.001G334501 - K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
15 Sobic.010G189366 - K01674: carbonic anhydrase
16 Sobic.001G179400 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
17 Sobic.004G349150 - -
18 Sobic.005G200700 dirigent, putative, expressed -
19 Sobic.004G227900 expansin precursor, putative, expressed -
20 Sobic.010G215700 A tissue specific expression in primordial inflorescences(PubMedID : 27501690)@OsSPL10 - SBP-box gene family member, expressed -


Gene co-expression network
sample Sobic007G125400 Sobic007G125400 Sobic003G120600 Sobic003G120600 Sobic007G125400--Sobic003G120600 Sobic008G004200 Sobic008G004200 Sobic007G125400--Sobic008G004200 Sobic001G266100 Sobic001G266100 Sobic007G125400--Sobic001G266100 Sobic008G012600 Sobic008G012600 Sobic007G125400--Sobic008G012600 Sobic002G179200 Sobic002G179200 Sobic007G125400--Sobic002G179200 Sobic003G011700 Sobic003G011700 Sobic007G125400--Sobic003G011700 Sobic010G027700 Sobic010G027700 Sobic007G125400--Sobic010G027700 Sobic002G047366 Sobic002G047366 Sobic007G125400--Sobic002G047366 Sobic006G151800 Sobic006G151800 Sobic007G125400--Sobic006G151800 Sobic003G120600--Sobic007G125400 Sobic003G004900 Sobic003G004900 Sobic003G120600--Sobic003G004900 Sobic003G120600--Sobic008G004200 Sobic003G120600--Sobic002G179200 Sobic001G438500 Sobic001G438500 Sobic003G120600--Sobic001G438500 Sobic001G179400 Sobic001G179400 Sobic003G120600--Sobic001G179400 Sobic006G092300 Sobic006G092300 Sobic003G120600--Sobic006G092300 Sobic010G065700 Sobic010G065700 Sobic003G120600--Sobic010G065700 Sobic003G120600--Sobic008G012600 Sobic001G334501 Sobic001G334501 Sobic008G004200--Sobic001G334501 Sobic004G227900 Sobic004G227900 Sobic008G004200--Sobic004G227900 Sobic005G200700 Sobic005G200700 Sobic008G004200--Sobic005G200700 Sobic001G491400 Sobic001G491400 Sobic008G004200--Sobic001G491400 Sobic010G049600 Sobic010G049600 Sobic008G004200--Sobic010G049600 Sobic010G215700 Sobic010G215700 Sobic008G004200--Sobic010G215700 Sobic001G366000 Sobic001G366000 Sobic008G004200--Sobic001G366000 Sobic002G399600 Sobic002G399600 Sobic008G004200--Sobic002G399600 Sobic002G410600 Sobic002G410600 Sobic008G004200--Sobic002G410600 Sobic001G266100--Sobic010G049600 Sobic001G266100--Sobic001G491400 Sobic001G266100--Sobic005G200700 Sobic007G049100 Sobic007G049100 Sobic001G266100--Sobic007G049100 Sobic004G118100 Sobic004G118100 Sobic001G266100--Sobic004G118100 Sobic001G266100--Sobic001G334501 Sobic001G266100--Sobic008G012600 Sobic001G266100--Sobic002G399600 Sobic001G266100--Sobic010G215700 Sobic006G160800 Sobic006G160800 Sobic008G012600--Sobic006G160800 Sobic008G012600--Sobic001G266100 Sobic005G110900 Sobic005G110900 Sobic008G012600--Sobic005G110900 Sobic008G012600--Sobic010G049600 Sobic008G012600--Sobic001G491400 Sobic005G218000 Sobic005G218000 Sobic008G012600--Sobic005G218000 Sobic008G012600--Sobic010G215700 Sobic008G012600--Sobic008G004200 Sobic009G254500 Sobic009G254500 Sobic008G012600--Sobic009G254500 Sobic002G179200--Sobic001G366000 Sobic002G179200--Sobic003G011700 Sobic001G102600 Sobic001G102600 Sobic002G179200--Sobic001G102600 Sobic002G179200--Sobic008G004200 Sobic001G511600 Sobic001G511600 Sobic002G179200--Sobic001G511600 Sobic002G179200--Sobic006G092300 Sobic010G189366 Sobic010G189366 Sobic002G179200--Sobic010G189366 Sobic002G179200--Sobic003G004900 Sobic001G472400 Sobic001G472400 Sobic002G179200--Sobic001G472400 Sobic003G011700--Sobic001G102600 Sobic003G011700--Sobic010G189366 Sobic003G011700--Sobic001G491400 Sobic003G011700--Sobic010G049600 Sobic004G349150 Sobic004G349150 Sobic003G011700--Sobic004G349150 Sobic003G011700--Sobic001G472400 Sobic003G011700--Sobic003G004900 Sobic003G011700--Sobic005G200700 Sobic003G011700--Sobic001G511600 Sobic002G068400 Sobic002G068400 Sobic010G027700--Sobic002G068400 Sobic004G215000 Sobic004G215000 Sobic010G027700--Sobic004G215000 Sobic010G027700--Sobic001G438500 Sobic010G027700--Sobic007G125400 Sobic010G027700--Sobic003G120600 Sobic010G027700--Sobic001G179400 Sobic007G094200 Sobic007G094200 Sobic010G027700--Sobic007G094200 Sobic002G023700 Sobic002G023700 Sobic010G027700--Sobic002G023700 Sobic009G037300 Sobic009G037300 Sobic010G027700--Sobic009G037300 Sobic001G133200 Sobic001G133200 Sobic002G047366--Sobic001G133200 Sobic002G029700 Sobic002G029700 Sobic006G151800--Sobic002G029700 Sobic006G151800--Sobic001G334501 Sobic006G098300 Sobic006G098300 Sobic006G151800--Sobic006G098300 Sobic007G037400 Sobic007G037400 Sobic006G151800--Sobic007G037400 Sobic007G107500 Sobic007G107500 Sobic006G151800--Sobic007G107500 Sobic003G088200 Sobic003G088200 Sobic006G151800--Sobic003G088200 Sobic007G098600 Sobic007G098600 Sobic006G151800--Sobic007G098600 Sobic006G151800--Sobic001G133200
Octagon: transcription factors


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