Gene annotation
Transcriptome id Sobic.003G011700.1
Synonym KPHMT1, Sb03g001190, PANB1
Functional annotation 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed
UniProt C5XKA8
Pfam PF02548
Panther DB PTHR20881 PTHR20881:SF0
NCBI CDD KOG2949; Ketopantoate hydroxymethyltransferase
KEGG Orthology K00606; 3-methyl-2-oxobutanoate hydroxymethyltransferase
Gene Ontology GO:0015940; pantothenate biosynthetic process GO:00038643-methyl-2-oxobutanoate hydroxymethyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G46110 : ketopantoate hydroxymethyltransferase 1
RAP-DB (Rice) LOC_Os01g12560.1 : 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G102600 regulatory protein, putative, expressed -
2 Sobic.010G189366 - K01674: carbonic anhydrase
3 Sobic.001G491400 cytochrome P450, putative, expressed -
4 Sobic.010G049600 expressed protein -
5 Sobic.004G349150 - -
6 Sobic.001G472400 pumilio domain-containing protein PPD1, putative, expressed -
7 Sobic.003G004900 AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
8 Sobic.005G200700 dirigent, putative, expressed -
9 Sobic.001G511600 expressed protein -
10 Sobic.006G092300 ZOS4-06 - C2H2 zinc finger protein, expressed -
11 Sobic.006G267400 CRP2 - Cysteine-rich family protein precursor, expressed -
12 Sobic.004G202800 glycosyl hydrolase family 5 protein, putative, expressed -
13 Sobic.010G187400 ABC-2 type transporter domain containing protein, expressed -
14 Sobic.002G399600 LTPL2 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.004G001700 POEI25 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.007G049100 expressed protein -
17 Sobic.001G334501 - K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
18 Sobic.007G180700 LTPL44 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.005G226500 thaumatin family domain containing protein, expressed -
20 Sobic.002G270400 LTPL45 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic003G011700 Sobic003G011700 Sobic001G102600 Sobic001G102600 Sobic003G011700--Sobic001G102600 Sobic010G189366 Sobic010G189366 Sobic003G011700--Sobic010G189366 Sobic001G491400 Sobic001G491400 Sobic003G011700--Sobic001G491400 Sobic010G049600 Sobic010G049600 Sobic003G011700--Sobic010G049600 Sobic004G349150 Sobic004G349150 Sobic003G011700--Sobic004G349150 Sobic001G472400 Sobic001G472400 Sobic003G011700--Sobic001G472400 Sobic003G004900 Sobic003G004900 Sobic003G011700--Sobic003G004900 Sobic005G200700 Sobic005G200700 Sobic003G011700--Sobic005G200700 Sobic001G511600 Sobic001G511600 Sobic003G011700--Sobic001G511600 Sobic001G102600--Sobic010G189366 Sobic001G102600--Sobic004G349150 Sobic006G267400 Sobic006G267400 Sobic001G102600--Sobic006G267400 Sobic004G001700 Sobic004G001700 Sobic001G102600--Sobic004G001700 Sobic010G187400 Sobic010G187400 Sobic001G102600--Sobic010G187400 Sobic001G102600--Sobic003G004900 Sobic006G098300 Sobic006G098300 Sobic001G102600--Sobic006G098300 Sobic008G032400 Sobic008G032400 Sobic001G102600--Sobic008G032400 Sobic001G102600--Sobic001G472400 Sobic010G189366--Sobic004G349150 Sobic010G189366--Sobic001G102600 Sobic010G189366--Sobic004G001700 Sobic010G189366--Sobic010G187400 Sobic010G189366--Sobic008G032400 Sobic006G006900 Sobic006G006900 Sobic010G189366--Sobic006G006900 Sobic002G270400 Sobic002G270400 Sobic010G189366--Sobic002G270400 Sobic001G133200 Sobic001G133200 Sobic010G189366--Sobic001G133200 Sobic001G491400--Sobic010G049600 Sobic001G491400--Sobic005G200700 Sobic002G399600 Sobic002G399600 Sobic001G491400--Sobic002G399600 Sobic007G049100 Sobic007G049100 Sobic001G491400--Sobic007G049100 Sobic001G334501 Sobic001G334501 Sobic001G491400--Sobic001G334501 Sobic005G226500 Sobic005G226500 Sobic001G491400--Sobic005G226500 Sobic001G491400--Sobic002G270400 Sobic007G107500 Sobic007G107500 Sobic001G491400--Sobic007G107500 Sobic007G037400 Sobic007G037400 Sobic001G491400--Sobic007G037400 Sobic010G049600--Sobic001G491400 Sobic010G049600--Sobic005G200700 Sobic010G049600--Sobic007G049100 Sobic001G266100 Sobic001G266100 Sobic010G049600--Sobic001G266100 Sobic010G049600--Sobic002G399600 Sobic010G049600--Sobic001G334501 Sobic010G049600--Sobic005G226500 Sobic010G049600--Sobic007G107500 Sobic010G049600--Sobic002G270400 Sobic004G349150--Sobic010G189366 Sobic004G349150--Sobic010G187400 Sobic004G349150--Sobic004G001700 Sobic004G349150--Sobic008G032400 Sobic004G349150--Sobic006G006900 Sobic004G349150--Sobic002G270400 Sobic003G263800 Sobic003G263800 Sobic004G349150--Sobic003G263800 Sobic002G427550 Sobic002G427550 Sobic004G349150--Sobic002G427550 Sobic004G349150--Sobic001G133200 Sobic001G472400--Sobic010G189366 Sobic001G472400--Sobic001G102600 Sobic001G472400--Sobic004G349150 Sobic001G472400--Sobic004G001700 Sobic001G472400--Sobic006G267400 Sobic001G472400--Sobic010G187400 Sobic010G259400 Sobic010G259400 Sobic001G472400--Sobic010G259400 Sobic004G202800 Sobic004G202800 Sobic001G472400--Sobic004G202800 Sobic001G472400--Sobic008G032400 Sobic007G180700 Sobic007G180700 Sobic003G004900--Sobic007G180700 Sobic003G004900--Sobic006G267400 Sobic003G004900--Sobic001G102600 Sobic003G004900--Sobic010G189366 Sobic002G173300 Sobic002G173300 Sobic003G004900--Sobic002G173300 Sobic003G004900--Sobic004G349150 Sobic003G004900--Sobic004G001700 Sobic003G004900--Sobic006G098300 Sobic006G137000 Sobic006G137000 Sobic003G004900--Sobic006G137000 Sobic005G200700--Sobic002G399600 Sobic005G200700--Sobic007G107500 Sobic005G200700--Sobic005G226500 Sobic005G200700--Sobic007G037400 Sobic005G200700--Sobic002G270400 Sobic005G200700--Sobic010G187400 Sobic005G200700--Sobic001G334501 Sobic005G200700--Sobic006G006900 Sobic007G000600 Sobic007G000600 Sobic005G200700--Sobic007G000600 Sobic001G511600--Sobic001G102600 Sobic001G472301 Sobic001G472301 Sobic001G511600--Sobic001G472301 Sobic001G511600--Sobic003G011700 Sobic001G511600--Sobic001G472400 Sobic001G511600--Sobic010G189366 Sobic005G090000 Sobic005G090000 Sobic001G511600--Sobic005G090000 Sobic001G511600--Sobic004G349150 Sobic001G511600--Sobic004G202800 Sobic001G511600--Sobic003G004900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.