Gene annotation
Transcriptome id Sobic.003G004900.1
Synonym Sb03g000610, ACOS5
Functional annotation AMP-binding domain containing protein, expressed
UniProt C5XJK6
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF116
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G62940 : acyl-CoA synthetase 5
RAP-DB (Rice) LOC_Os04g24530.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011425 , Zm00025a022800
Brachypodium KQJ93616 , KQJ82000 , KQJ98507
Barley HORVU6Hr1G030390.3 , HORVU6Hr1G030390.2 , HORVU6Hr1G030390.1 , HORVU6Hr1G030390.4 , HORVU2Hr1G066630.3 , HORVU2Hr1G066630.2 , HORVU2Hr1G066630.1
Wheat TraesCS6A02G151700 , TraesCS6D02G141700 , TraesCS2B02G291100 , TraesCS2D02G272200 , TraesCS2B02G171200 , TraesCS6B02G179900 , TraesCS6B02G179900 , TraesCS2A02G272900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G004900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G180700 LTPL44 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.006G267400 CRP2 - Cysteine-rich family protein precursor, expressed -
3 Sobic.001G102600 regulatory protein, putative, expressed -
4 Sobic.010G189366 - K01674: carbonic anhydrase
5 Sobic.002G173300 BURP domain containing protein, expressed -
6 Sobic.004G349150 - -
7 Sobic.004G001700 POEI25 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
8 Sobic.006G098300 alpha/beta hydrolase fold, putative, expressed -
9 Sobic.006G137000 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
10 Sobic.002G270400 LTPL45 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.010G187400 ABC-2 type transporter domain containing protein, expressed -
12 Sobic.002G399600 LTPL2 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.008G032400 LTPL58 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.006G006900 expressed protein -
15 Sobic.001G334501 - K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
16 Sobic.006G006800 expressed protein -
17 Sobic.007G107500 LTPL4 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.007G037400 expressed protein -
19 Sobic.007G098600 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G004900 Sobic003G004900 Sobic007G180700 Sobic007G180700 Sobic003G004900--Sobic007G180700 Sobic006G267400 Sobic006G267400 Sobic003G004900--Sobic006G267400 Sobic001G102600 Sobic001G102600 Sobic003G004900--Sobic001G102600 Sobic010G189366 Sobic010G189366 Sobic003G004900--Sobic010G189366 Sobic002G173300 Sobic002G173300 Sobic003G004900--Sobic002G173300 Sobic004G349150 Sobic004G349150 Sobic003G004900--Sobic004G349150 Sobic004G001700 Sobic004G001700 Sobic003G004900--Sobic004G001700 Sobic006G098300 Sobic006G098300 Sobic003G004900--Sobic006G098300 Sobic006G137000 Sobic006G137000 Sobic003G004900--Sobic006G137000 Sobic007G180700--Sobic006G267400 Sobic007G180700--Sobic006G098300 Sobic007G180700--Sobic003G004900 Sobic002G270400 Sobic002G270400 Sobic007G180700--Sobic002G270400 Sobic002G399600 Sobic002G399600 Sobic007G180700--Sobic002G399600 Sobic007G180700--Sobic004G001700 Sobic007G180700--Sobic002G173300 Sobic010G187400 Sobic010G187400 Sobic007G180700--Sobic010G187400 Sobic007G107500 Sobic007G107500 Sobic007G180700--Sobic007G107500 Sobic006G267400--Sobic006G098300 Sobic006G267400--Sobic007G180700 Sobic006G267400--Sobic002G270400 Sobic006G267400--Sobic004G349150 Sobic006G267400--Sobic002G399600 Sobic006G267400--Sobic010G187400 Sobic006G267400--Sobic004G001700 Sobic006G006900 Sobic006G006900 Sobic006G267400--Sobic006G006900 Sobic008G032400 Sobic008G032400 Sobic006G267400--Sobic008G032400 Sobic001G102600--Sobic010G189366 Sobic001G102600--Sobic004G349150 Sobic001G102600--Sobic006G267400 Sobic001G102600--Sobic004G001700 Sobic001G102600--Sobic010G187400 Sobic001G102600--Sobic003G004900 Sobic001G102600--Sobic006G098300 Sobic001G102600--Sobic008G032400 Sobic001G472400 Sobic001G472400 Sobic001G102600--Sobic001G472400 Sobic010G189366--Sobic004G349150 Sobic010G189366--Sobic001G102600 Sobic010G189366--Sobic004G001700 Sobic010G189366--Sobic010G187400 Sobic010G189366--Sobic008G032400 Sobic010G189366--Sobic006G006900 Sobic010G189366--Sobic002G270400 Sobic001G133200 Sobic001G133200 Sobic010G189366--Sobic001G133200 Sobic002G173300--Sobic004G001700 Sobic002G173300--Sobic007G180700 Sobic002G173300--Sobic006G267400 Sobic006G006800 Sobic006G006800 Sobic002G173300--Sobic006G006800 Sobic002G173300--Sobic006G098300 Sobic002G173300--Sobic002G270400 Sobic002G173300--Sobic004G349150 Sobic009G074900 Sobic009G074900 Sobic002G173300--Sobic009G074900 Sobic003G088200 Sobic003G088200 Sobic002G173300--Sobic003G088200 Sobic004G349150--Sobic010G189366 Sobic004G349150--Sobic010G187400 Sobic004G349150--Sobic004G001700 Sobic004G349150--Sobic008G032400 Sobic004G349150--Sobic006G006900 Sobic004G349150--Sobic002G270400 Sobic003G263800 Sobic003G263800 Sobic004G349150--Sobic003G263800 Sobic002G427550 Sobic002G427550 Sobic004G349150--Sobic002G427550 Sobic004G349150--Sobic001G133200 Sobic004G001700--Sobic010G187400 Sobic004G001700--Sobic006G006900 Sobic004G001700--Sobic002G270400 Sobic004G001700--Sobic008G032400 Sobic007G098600 Sobic007G098600 Sobic004G001700--Sobic007G098600 Sobic004G001700--Sobic002G427550 Sobic004G001700--Sobic001G133200 Sobic006G098300--Sobic002G270400 Sobic006G098300--Sobic006G006900 Sobic006G098300--Sobic007G098600 Sobic006G098300--Sobic001G133200 Sobic006G137000--Sobic006G267400 Sobic006G137000--Sobic003G004900 Sobic005G054800 Sobic005G054800 Sobic006G137000--Sobic005G054800 Sobic006G137000--Sobic001G102600 Sobic006G137000--Sobic007G180700 Sobic006G137000--Sobic006G098300 Sobic006G137000--Sobic010G189366 Sobic006G137000--Sobic004G349150 Sobic006G137000--Sobic002G173300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.