Gene annotation
Transcriptome id Sobic.006G185600.1
Synonym Sb06g025960
Functional annotation HOTHEAD precursor, putative, expressed
UniProt A0A1B6PMS3
Pfam PF05199 PF00732
Panther DB PTHR11552 PTHR11552:SF116
NCBI CDD -
KEGG Orthology K00108; betA, choline dehydrogenase
Gene Ontology GO:0016614; oxidoreductase activity, acting on CH-OH group of donors


Orthologs (automatic annotation)
TAIR AT1G12570 : Glucose-methanol-choline (GMC) oxidoreductase family protein
RAP-DB (Rice) LOC_Os04g48400.1 : HOTHEAD precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006050 , Zm00025a021507 , Zm00025a010145 , Zm00025a053519 , Zm00025a003093
Brachypodium KQJ84131 , KQK00765 , KQJ97532 , PNT78317
Barley HORVU2Hr1G094680.3 , HORVU2Hr1G094680.2 , HORVU1Hr1G048960.1 , HORVU1Hr1G048960.2 , HORVU1Hr1G048960.3 , HORVU4Hr1G085790.1 , HORVU4Hr1G085790.3 , HORVU4Hr1G085790.2 , HORVU6Hr1G065720.1 , HORVU6Hr1G065720.2
Wheat TraesCS1D02G189200 , TraesCS4B02G353200 , TraesCS4B02G353200 , TraesCS2B02G417100 , TraesCS2B02G417100 , TraesCS6D02G238700 , TraesCS5A02G522000 , TraesCS1A02G187500 , TraesCS6A02G257400 , TraesCS4D02G347200 , TraesCS4D02G347200 , TraesCS6B02G267700 , TraesCS2A02G399100 , TraesCS2A02G399100 , TraesCS2D02G396600 , TraesCS1B02G195300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G179800 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
2 Sobic.005G180000 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
3 Sobic.005G118700 expressed protein -
4 Sobic.001G273200 transferase family protein, putative, expressed -
5 Sobic.008G013400 nodulin, putative, expressed -
6 Sobic.006G089700 LTPL94 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.004G215400 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
8 Sobic.006G068200 expressed protein -
9 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
10 Sobic.004G202800 glycosyl hydrolase family 5 protein, putative, expressed -
11 Sobic.005G090000 expressed protein -
12 Sobic.003G271700 - -
13 Sobic.001G108100 expressed protein -
14 Sobic.006G006800 expressed protein -
15 Sobic.010G236000 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
16 Sobic.001G511600 expressed protein -
17 Sobic.004G118100 harpin-induced protein 1 domain containing protein, expressed -
18 Sobic.007G206000 dihydroflavonol-4-reductase, putative, expressed -
19 Sobic.005G218000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
20 Sobic.004G045500 phytosulfokine receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic006G185600 Sobic006G185600 Sobic005G179800 Sobic005G179800 Sobic006G185600--Sobic005G179800 Sobic005G180000 Sobic005G180000 Sobic006G185600--Sobic005G180000 Sobic005G118700 Sobic005G118700 Sobic006G185600--Sobic005G118700 Sobic001G273200 Sobic001G273200 Sobic006G185600--Sobic001G273200 Sobic008G013400 Sobic008G013400 Sobic006G185600--Sobic008G013400 Sobic006G089700 Sobic006G089700 Sobic006G185600--Sobic006G089700 Sobic004G215400 Sobic004G215400 Sobic006G185600--Sobic004G215400 Sobic006G068200 Sobic006G068200 Sobic006G185600--Sobic006G068200 Sobic002G312200 Sobic002G312200 Sobic006G185600--Sobic002G312200 Sobic005G179800--Sobic005G180000 Sobic005G179800--Sobic006G185600 Sobic005G179800--Sobic001G273200 Sobic005G179800--Sobic005G118700 Sobic005G179800--Sobic008G013400 Sobic005G179800--Sobic006G089700 Sobic005G179800--Sobic004G215400 Sobic005G179800--Sobic006G068200 Sobic004G202800 Sobic004G202800 Sobic005G179800--Sobic004G202800 Sobic005G180000--Sobic005G179800 Sobic005G180000--Sobic006G185600 Sobic005G180000--Sobic001G273200 Sobic005G180000--Sobic005G118700 Sobic005G180000--Sobic004G215400 Sobic005G180000--Sobic006G068200 Sobic005G180000--Sobic008G013400 Sobic005G180000--Sobic006G089700 Sobic003G347100 Sobic003G347100 Sobic005G180000--Sobic003G347100 Sobic005G118700--Sobic006G089700 Sobic005G118700--Sobic006G185600 Sobic005G118700--Sobic005G179800 Sobic005G118700--Sobic008G013400 Sobic005G118700--Sobic004G202800 Sobic005G118700--Sobic002G312200 Sobic005G118700--Sobic005G180000 Sobic006G006800 Sobic006G006800 Sobic005G118700--Sobic006G006800 Sobic010G236000 Sobic010G236000 Sobic005G118700--Sobic010G236000 Sobic001G273200--Sobic005G180000 Sobic001G273200--Sobic005G179800 Sobic001G273200--Sobic006G185600 Sobic001G273200--Sobic006G068200 Sobic001G273200--Sobic005G118700 Sobic001G273200--Sobic004G215400 Sobic001G273200--Sobic008G013400 Sobic002G032100 Sobic002G032100 Sobic001G273200--Sobic002G032100 Sobic002G027300 Sobic002G027300 Sobic001G273200--Sobic002G027300 Sobic001G266100 Sobic001G266100 Sobic008G013400--Sobic001G266100 Sobic004G118100 Sobic004G118100 Sobic008G013400--Sobic004G118100 Sobic008G013400--Sobic005G118700 Sobic010G049600 Sobic010G049600 Sobic008G013400--Sobic010G049600 Sobic001G491400 Sobic001G491400 Sobic008G013400--Sobic001G491400 Sobic003G382400 Sobic003G382400 Sobic008G013400--Sobic003G382400 Sobic003G271700 Sobic003G271700 Sobic008G013400--Sobic003G271700 Sobic003G011700 Sobic003G011700 Sobic008G013400--Sobic003G011700 Sobic008G013400--Sobic002G312200 Sobic007G206000 Sobic007G206000 Sobic006G089700--Sobic007G206000 Sobic006G089700--Sobic010G236000 Sobic006G079500 Sobic006G079500 Sobic006G089700--Sobic006G079500 Sobic006G089700--Sobic004G202800 Sobic006G089700--Sobic003G271700 Sobic002G410600 Sobic002G410600 Sobic006G089700--Sobic002G410600 Sobic006G089700--Sobic006G006800 Sobic004G318800 Sobic004G318800 Sobic006G089700--Sobic004G318800 Sobic003G038700 Sobic003G038700 Sobic006G089700--Sobic003G038700 Sobic004G215400--Sobic006G068200 Sobic010G087600 Sobic010G087600 Sobic004G215400--Sobic010G087600 Sobic004G215400--Sobic005G180000 Sobic004G215400--Sobic006G185600 Sobic004G215400--Sobic001G273200 Sobic004G215400--Sobic005G179800 Sobic010G014700 Sobic010G014700 Sobic004G215400--Sobic010G014700 Sobic001G108100 Sobic001G108100 Sobic004G215400--Sobic001G108100 Sobic004G215400--Sobic002G032100 Sobic006G068200--Sobic004G215400 Sobic006G068200--Sobic001G273200 Sobic006G068200--Sobic005G180000 Sobic006G068200--Sobic002G032100 Sobic006G068200--Sobic002G027300 Sobic006G068200--Sobic006G185600 Sobic006G068200--Sobic005G179800 Sobic006G068200--Sobic001G108100 Sobic006G068200--Sobic010G087600 Sobic005G218000 Sobic005G218000 Sobic002G312200--Sobic005G218000 Sobic007G076100 Sobic007G076100 Sobic002G312200--Sobic007G076100 Sobic001G341700 Sobic001G341700 Sobic002G312200--Sobic001G341700 Sobic002G312200--Sobic004G318800 Sobic002G312200--Sobic006G089700 Sobic002G312200--Sobic005G118700 Sobic006G092300 Sobic006G092300 Sobic002G312200--Sobic006G092300 Sobic002G312300 Sobic002G312300 Sobic002G312200--Sobic002G312300 Sobic003G178500 Sobic003G178500 Sobic002G312200--Sobic003G178500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.