Gene annotation
Transcriptome id Sobic.005G180000.1
Synonym AGL80, FEM111, Sb05g023910
Functional annotation OsMADS87 - MADS-box family gene with M-gamma type-box, expressed
UniProt A0A1B6PT95
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF161
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G05860 : MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os03g38610.1 : OsMADS87 - MADS-box family gene with M-gamma type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G179800 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
2 Sobic.006G185600 HOTHEAD precursor, putative, expressed K00108: betA, choline dehydrogenase
3 Sobic.001G273200 transferase family protein, putative, expressed -
4 Sobic.005G118700 expressed protein -
5 Sobic.004G215400 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
6 Sobic.006G068200 expressed protein -
7 Sobic.008G013400 nodulin, putative, expressed -
8 Sobic.006G089700 LTPL94 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.003G347100 - -
10 Sobic.005G090000 expressed protein -
11 Sobic.004G202800 glycosyl hydrolase family 5 protein, putative, expressed -
12 Sobic.002G032100 - -
13 Sobic.002G027300 ZOS1-07 - C2H2 zinc finger protein, expressed -
14 Sobic.003G271700 - -
15 Sobic.006G006800 expressed protein -
16 Sobic.010G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
17 Sobic.001G511600 expressed protein -
18 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
19 Sobic.010G236000 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
20 Sobic.001G108100 expressed protein -


Gene co-expression network
sample Sobic005G180000 Sobic005G180000 Sobic005G179800 Sobic005G179800 Sobic005G180000--Sobic005G179800 Sobic006G185600 Sobic006G185600 Sobic005G180000--Sobic006G185600 Sobic001G273200 Sobic001G273200 Sobic005G180000--Sobic001G273200 Sobic005G118700 Sobic005G118700 Sobic005G180000--Sobic005G118700 Sobic004G215400 Sobic004G215400 Sobic005G180000--Sobic004G215400 Sobic006G068200 Sobic006G068200 Sobic005G180000--Sobic006G068200 Sobic008G013400 Sobic008G013400 Sobic005G180000--Sobic008G013400 Sobic006G089700 Sobic006G089700 Sobic005G180000--Sobic006G089700 Sobic003G347100 Sobic003G347100 Sobic005G180000--Sobic003G347100 Sobic005G179800--Sobic005G180000 Sobic005G179800--Sobic006G185600 Sobic005G179800--Sobic001G273200 Sobic005G179800--Sobic005G118700 Sobic005G179800--Sobic008G013400 Sobic005G179800--Sobic006G089700 Sobic005G179800--Sobic004G215400 Sobic005G179800--Sobic006G068200 Sobic004G202800 Sobic004G202800 Sobic005G179800--Sobic004G202800 Sobic006G185600--Sobic005G179800 Sobic006G185600--Sobic005G180000 Sobic006G185600--Sobic005G118700 Sobic006G185600--Sobic001G273200 Sobic006G185600--Sobic008G013400 Sobic006G185600--Sobic006G089700 Sobic006G185600--Sobic004G215400 Sobic006G185600--Sobic006G068200 Sobic002G312200 Sobic002G312200 Sobic006G185600--Sobic002G312200 Sobic001G273200--Sobic005G180000 Sobic001G273200--Sobic005G179800 Sobic001G273200--Sobic006G185600 Sobic001G273200--Sobic006G068200 Sobic001G273200--Sobic005G118700 Sobic001G273200--Sobic004G215400 Sobic001G273200--Sobic008G013400 Sobic002G032100 Sobic002G032100 Sobic001G273200--Sobic002G032100 Sobic002G027300 Sobic002G027300 Sobic001G273200--Sobic002G027300 Sobic005G118700--Sobic006G089700 Sobic005G118700--Sobic006G185600 Sobic005G118700--Sobic005G179800 Sobic005G118700--Sobic008G013400 Sobic005G118700--Sobic004G202800 Sobic005G118700--Sobic002G312200 Sobic005G118700--Sobic005G180000 Sobic006G006800 Sobic006G006800 Sobic005G118700--Sobic006G006800 Sobic010G236000 Sobic010G236000 Sobic005G118700--Sobic010G236000 Sobic004G215400--Sobic006G068200 Sobic010G087600 Sobic010G087600 Sobic004G215400--Sobic010G087600 Sobic004G215400--Sobic005G180000 Sobic004G215400--Sobic006G185600 Sobic004G215400--Sobic001G273200 Sobic004G215400--Sobic005G179800 Sobic010G014700 Sobic010G014700 Sobic004G215400--Sobic010G014700 Sobic001G108100 Sobic001G108100 Sobic004G215400--Sobic001G108100 Sobic004G215400--Sobic002G032100 Sobic006G068200--Sobic004G215400 Sobic006G068200--Sobic001G273200 Sobic006G068200--Sobic005G180000 Sobic006G068200--Sobic002G032100 Sobic006G068200--Sobic002G027300 Sobic006G068200--Sobic006G185600 Sobic006G068200--Sobic005G179800 Sobic006G068200--Sobic001G108100 Sobic006G068200--Sobic010G087600 Sobic001G266100 Sobic001G266100 Sobic008G013400--Sobic001G266100 Sobic004G118100 Sobic004G118100 Sobic008G013400--Sobic004G118100 Sobic008G013400--Sobic005G118700 Sobic010G049600 Sobic010G049600 Sobic008G013400--Sobic010G049600 Sobic001G491400 Sobic001G491400 Sobic008G013400--Sobic001G491400 Sobic003G382400 Sobic003G382400 Sobic008G013400--Sobic003G382400 Sobic003G271700 Sobic003G271700 Sobic008G013400--Sobic003G271700 Sobic003G011700 Sobic003G011700 Sobic008G013400--Sobic003G011700 Sobic008G013400--Sobic002G312200 Sobic007G206000 Sobic007G206000 Sobic006G089700--Sobic007G206000 Sobic006G089700--Sobic010G236000 Sobic006G079500 Sobic006G079500 Sobic006G089700--Sobic006G079500 Sobic006G089700--Sobic004G202800 Sobic006G089700--Sobic003G271700 Sobic002G410600 Sobic002G410600 Sobic006G089700--Sobic002G410600 Sobic006G089700--Sobic006G006800 Sobic004G318800 Sobic004G318800 Sobic006G089700--Sobic004G318800 Sobic003G038700 Sobic003G038700 Sobic006G089700--Sobic003G038700 Sobic003G347100--Sobic005G180000 Sobic003G347100--Sobic005G179800 Sobic003G347100--Sobic006G185600 Sobic003G347100--Sobic001G273200 Sobic007G043300 Sobic007G043300 Sobic003G347100--Sobic007G043300 Sobic003G347100--Sobic004G215400 Sobic003G347100--Sobic006G068200 Sobic010G038400 Sobic010G038400 Sobic003G347100--Sobic010G038400 Sobic003G347100--Sobic005G118700
Octagon: transcription factors


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