Gene annotation
Transcriptome id Sobic.006G068200.1
Synonym Sb06g015480, ZPR3
Functional annotation expressed protein
UniProt C5YFT8
Pfam -
Panther DB PTHR33601 PTHR33601:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52770 : protein binding
RAP-DB (Rice) LOC_Os04g33560.1 : expressed protein
MaizeGDB (Corn) Zm00025a055993 , Zm00025a011532 , Zm00025a020536
Brachypodium KQJ82498
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215400 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
2 Sobic.001G273200 transferase family protein, putative, expressed -
3 Sobic.005G180000 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
4 Sobic.002G032100 - -
5 Sobic.002G027300 ZOS1-07 - C2H2 zinc finger protein, expressed -
6 Sobic.006G185600 HOTHEAD precursor, putative, expressed K00108: betA, choline dehydrogenase
7 Sobic.005G179800 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
8 Sobic.001G108100 expressed protein -
9 Sobic.010G087600 heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
10 Sobic.010G014700 expressed protein -
11 Sobic.005G118700 expressed protein -
12 Sobic.003G347100 - -
13 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
14 Sobic.006G140801 - -
15 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
16 Sobic.009G088700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cellulase, putative, expressed -
17 Sobic.001G320500 expressed protein -
18 Sobic.003G373900 universal stress protein domain containing protein, putative, expressed -
19 Sobic.001G199400 monocopper oxidase, putative, expressed -
20 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G068200 Sobic006G068200 Sobic004G215400 Sobic004G215400 Sobic006G068200--Sobic004G215400 Sobic001G273200 Sobic001G273200 Sobic006G068200--Sobic001G273200 Sobic005G180000 Sobic005G180000 Sobic006G068200--Sobic005G180000 Sobic002G032100 Sobic002G032100 Sobic006G068200--Sobic002G032100 Sobic002G027300 Sobic002G027300 Sobic006G068200--Sobic002G027300 Sobic006G185600 Sobic006G185600 Sobic006G068200--Sobic006G185600 Sobic005G179800 Sobic005G179800 Sobic006G068200--Sobic005G179800 Sobic001G108100 Sobic001G108100 Sobic006G068200--Sobic001G108100 Sobic010G087600 Sobic010G087600 Sobic006G068200--Sobic010G087600 Sobic004G215400--Sobic006G068200 Sobic004G215400--Sobic010G087600 Sobic004G215400--Sobic005G180000 Sobic004G215400--Sobic006G185600 Sobic004G215400--Sobic001G273200 Sobic004G215400--Sobic005G179800 Sobic010G014700 Sobic010G014700 Sobic004G215400--Sobic010G014700 Sobic004G215400--Sobic001G108100 Sobic004G215400--Sobic002G032100 Sobic001G273200--Sobic005G180000 Sobic001G273200--Sobic005G179800 Sobic001G273200--Sobic006G185600 Sobic001G273200--Sobic006G068200 Sobic005G118700 Sobic005G118700 Sobic001G273200--Sobic005G118700 Sobic001G273200--Sobic004G215400 Sobic008G013400 Sobic008G013400 Sobic001G273200--Sobic008G013400 Sobic001G273200--Sobic002G032100 Sobic001G273200--Sobic002G027300 Sobic005G180000--Sobic005G179800 Sobic005G180000--Sobic006G185600 Sobic005G180000--Sobic001G273200 Sobic005G180000--Sobic005G118700 Sobic005G180000--Sobic004G215400 Sobic005G180000--Sobic006G068200 Sobic005G180000--Sobic008G013400 Sobic006G089700 Sobic006G089700 Sobic005G180000--Sobic006G089700 Sobic003G347100 Sobic003G347100 Sobic005G180000--Sobic003G347100 Sobic002G032100--Sobic002G027300 Sobic002G032100--Sobic006G068200 Sobic002G032100--Sobic004G215400 Sobic004G215500 Sobic004G215500 Sobic002G032100--Sobic004G215500 Sobic002G032100--Sobic005G180000 Sobic002G032100--Sobic001G273200 Sobic002G032100--Sobic005G179800 Sobic002G032100--Sobic003G347100 Sobic002G032100--Sobic006G185600 Sobic002G027300--Sobic002G027300 Sobic002G027300--Sobic006G068200 Sobic002G027300--Sobic004G215400 Sobic002G027300--Sobic004G215500 Sobic002G027300--Sobic005G180000 Sobic002G027300--Sobic001G273200 Sobic002G027300--Sobic005G179800 Sobic002G027300--Sobic003G347100 Sobic002G027300--Sobic006G185600 Sobic006G185600--Sobic005G179800 Sobic006G185600--Sobic005G180000 Sobic006G185600--Sobic005G118700 Sobic006G185600--Sobic001G273200 Sobic006G185600--Sobic008G013400 Sobic006G185600--Sobic006G089700 Sobic006G185600--Sobic004G215400 Sobic006G185600--Sobic006G068200 Sobic002G312200 Sobic002G312200 Sobic006G185600--Sobic002G312200 Sobic005G179800--Sobic005G180000 Sobic005G179800--Sobic006G185600 Sobic005G179800--Sobic001G273200 Sobic005G179800--Sobic005G118700 Sobic005G179800--Sobic008G013400 Sobic005G179800--Sobic006G089700 Sobic005G179800--Sobic004G215400 Sobic005G179800--Sobic006G068200 Sobic004G202800 Sobic004G202800 Sobic005G179800--Sobic004G202800 Sobic001G108100--Sobic004G215400 Sobic001G108100--Sobic006G185600 Sobic001G108100--Sobic006G068200 Sobic004G313200 Sobic004G313200 Sobic001G108100--Sobic004G313200 Sobic001G108100--Sobic010G087600 Sobic010G087700 Sobic010G087700 Sobic001G108100--Sobic010G087700 Sobic001G108100--Sobic005G118700 Sobic001G108100--Sobic005G180000 Sobic001G108100--Sobic005G179800 Sobic002G360600 Sobic002G360600 Sobic010G087600--Sobic002G360600 Sobic006G107500 Sobic006G107500 Sobic010G087600--Sobic006G107500 Sobic010G087600--Sobic004G215400 Sobic010G087600--Sobic010G087700 Sobic009G146700 Sobic009G146700 Sobic010G087600--Sobic009G146700 Sobic010G087600--Sobic010G014700 Sobic010G087600--Sobic006G068200 Sobic002G363300 Sobic002G363300 Sobic010G087600--Sobic002G363300 Sobic010G087600--Sobic001G108100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.