Gene annotation
Transcriptome id Sobic.004G215400.1
Synonym Sb04g026050
Functional annotation SMP-30/Gluconolaconase/LRE-like region containing protein, expressed
UniProt C5XXN9
Pfam PF03088
Panther DB PTHR10426 PTHR10426:SF28
NCBI CDD KOG1520; Predicted alkaloid synthase/Surface mucin Hemomucin
KEGG Orthology -
Gene Ontology GO:0016844; strictosidine synthase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT3G57030 : Calcium-dependent phosphotriesterase superfamily protein
RAP-DB (Rice) LOC_Os06g41850.1 : SMP-30/Gluconolaconase/LRE-like region containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK21204 , KQK21164 , KQK10870
Barley HORVU2Hr1G013460.2 , HORVU2Hr1G013460.1 , HORVU2Hr1G012970.4 , HORVU2Hr1G012970.3 , HORVU2Hr1G012970.2 , HORVU6Hr1G026020.2 , HORVU6Hr1G026020.3 , HORVU6Hr1G026020.1 , HORVU3Hr1G074780.5 , HORVU3Hr1G074780.4 , HORVU3Hr1G074780.3
Wheat TraesCS2D02G076200 , TraesCS2D02G076000 , TraesCS2D02G076300 , TraesCS2A02G078000 , TraesCS2A02G260200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G068200 expressed protein -
2 Sobic.010G087600 heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
3 Sobic.005G180000 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
4 Sobic.006G185600 HOTHEAD precursor, putative, expressed K00108: betA, choline dehydrogenase
5 Sobic.001G273200 transferase family protein, putative, expressed -
6 Sobic.005G179800 OsMADS87 - MADS-box family gene with M-gamma type-box, expressed -
7 Sobic.010G014700 expressed protein -
8 Sobic.001G108100 expressed protein -
9 Sobic.002G032100 - -
10 Sobic.002G027300 ZOS1-07 - C2H2 zinc finger protein, expressed -
11 Sobic.005G118700 expressed protein -
12 Sobic.010G087700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
13 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
14 Sobic.002G363300 - -
15 Sobic.001G199400 monocopper oxidase, putative, expressed -
16 Sobic.004G045500 phytosulfokine receptor precursor, putative, expressed -
17 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.003G347100 - -
19 Sobic.001G320500 expressed protein -
20 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -


Gene co-expression network
sample Sobic004G215400 Sobic004G215400 Sobic006G068200 Sobic006G068200 Sobic004G215400--Sobic006G068200 Sobic010G087600 Sobic010G087600 Sobic004G215400--Sobic010G087600 Sobic005G180000 Sobic005G180000 Sobic004G215400--Sobic005G180000 Sobic006G185600 Sobic006G185600 Sobic004G215400--Sobic006G185600 Sobic001G273200 Sobic001G273200 Sobic004G215400--Sobic001G273200 Sobic005G179800 Sobic005G179800 Sobic004G215400--Sobic005G179800 Sobic010G014700 Sobic010G014700 Sobic004G215400--Sobic010G014700 Sobic001G108100 Sobic001G108100 Sobic004G215400--Sobic001G108100 Sobic002G032100 Sobic002G032100 Sobic004G215400--Sobic002G032100 Sobic006G068200--Sobic004G215400 Sobic006G068200--Sobic001G273200 Sobic006G068200--Sobic005G180000 Sobic006G068200--Sobic002G032100 Sobic002G027300 Sobic002G027300 Sobic006G068200--Sobic002G027300 Sobic006G068200--Sobic006G185600 Sobic006G068200--Sobic005G179800 Sobic006G068200--Sobic001G108100 Sobic006G068200--Sobic010G087600 Sobic002G360600 Sobic002G360600 Sobic010G087600--Sobic002G360600 Sobic006G107500 Sobic006G107500 Sobic010G087600--Sobic006G107500 Sobic010G087600--Sobic004G215400 Sobic010G087700 Sobic010G087700 Sobic010G087600--Sobic010G087700 Sobic009G146700 Sobic009G146700 Sobic010G087600--Sobic009G146700 Sobic010G087600--Sobic010G014700 Sobic010G087600--Sobic006G068200 Sobic002G363300 Sobic002G363300 Sobic010G087600--Sobic002G363300 Sobic010G087600--Sobic001G108100 Sobic005G180000--Sobic005G179800 Sobic005G180000--Sobic006G185600 Sobic005G180000--Sobic001G273200 Sobic005G118700 Sobic005G118700 Sobic005G180000--Sobic005G118700 Sobic005G180000--Sobic004G215400 Sobic005G180000--Sobic006G068200 Sobic008G013400 Sobic008G013400 Sobic005G180000--Sobic008G013400 Sobic006G089700 Sobic006G089700 Sobic005G180000--Sobic006G089700 Sobic003G347100 Sobic003G347100 Sobic005G180000--Sobic003G347100 Sobic006G185600--Sobic005G179800 Sobic006G185600--Sobic005G180000 Sobic006G185600--Sobic005G118700 Sobic006G185600--Sobic001G273200 Sobic006G185600--Sobic008G013400 Sobic006G185600--Sobic006G089700 Sobic006G185600--Sobic004G215400 Sobic006G185600--Sobic006G068200 Sobic002G312200 Sobic002G312200 Sobic006G185600--Sobic002G312200 Sobic001G273200--Sobic005G180000 Sobic001G273200--Sobic005G179800 Sobic001G273200--Sobic006G185600 Sobic001G273200--Sobic006G068200 Sobic001G273200--Sobic005G118700 Sobic001G273200--Sobic004G215400 Sobic001G273200--Sobic008G013400 Sobic001G273200--Sobic002G032100 Sobic001G273200--Sobic002G027300 Sobic005G179800--Sobic005G180000 Sobic005G179800--Sobic006G185600 Sobic005G179800--Sobic001G273200 Sobic005G179800--Sobic005G118700 Sobic005G179800--Sobic008G013400 Sobic005G179800--Sobic006G089700 Sobic005G179800--Sobic004G215400 Sobic005G179800--Sobic006G068200 Sobic004G202800 Sobic004G202800 Sobic005G179800--Sobic004G202800 Sobic003G338700 Sobic003G338700 Sobic010G014700--Sobic003G338700 Sobic010G014700--Sobic009G146700 Sobic001G199400 Sobic001G199400 Sobic010G014700--Sobic001G199400 Sobic005G199700 Sobic005G199700 Sobic010G014700--Sobic005G199700 Sobic010G014700--Sobic002G363300 Sobic010G014500 Sobic010G014500 Sobic010G014700--Sobic010G014500 Sobic007G180200 Sobic007G180200 Sobic010G014700--Sobic007G180200 Sobic003G027100 Sobic003G027100 Sobic010G014700--Sobic003G027100 Sobic010G014700--Sobic004G215400 Sobic001G108100--Sobic004G215400 Sobic001G108100--Sobic006G185600 Sobic001G108100--Sobic006G068200 Sobic004G313200 Sobic004G313200 Sobic001G108100--Sobic004G313200 Sobic001G108100--Sobic010G087600 Sobic001G108100--Sobic010G087700 Sobic001G108100--Sobic005G118700 Sobic001G108100--Sobic005G180000 Sobic001G108100--Sobic005G179800 Sobic002G032100--Sobic002G027300 Sobic002G032100--Sobic006G068200 Sobic002G032100--Sobic004G215400 Sobic004G215500 Sobic004G215500 Sobic002G032100--Sobic004G215500 Sobic002G032100--Sobic005G180000 Sobic002G032100--Sobic001G273200 Sobic002G032100--Sobic005G179800 Sobic002G032100--Sobic003G347100 Sobic002G032100--Sobic006G185600
Octagon: transcription factors


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