Gene annotation
Transcriptome id Sobic.010G071300.1
Synonym Sb10g006230
Functional annotation pectinesterase, putative, expressed
UniProt C5Z5Y0
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT2G26440 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os06g09340.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a049704
Brachypodium -
Barley HORVU7Hr1G032330.8 , HORVU7Hr1G032330.9 , HORVU7Hr1G032330.2 , HORVU7Hr1G032330.3 , HORVU7Hr1G032330.1 , HORVU7Hr1G032330.6 , HORVU7Hr1G032330.7 , HORVU7Hr1G032330.4 , HORVU7Hr1G032330.5 , HORVU2Hr1G018710.4 , HORVU2Hr1G018710.1 , HORVU2Hr1G018710.3 , HORVU2Hr1G018710.2
Wheat TraesCS7D02G157800 , TraesCS7A02G157300 , TraesCS7B02G061600 , TraesCS2A02G109600 , TraesCS2B02G127600
Populus -


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cDNA sequences
Sobic.010G071300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G222300 DEF7 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.006G069000 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
3 Sobic.005G047900 expressed protein -
4 Sobic.003G148400 Pectinesterase 1 (Precursor)(PubMedID : 26186930)@pectinesterase, putative, expressed K01051: pectinesterase
5 Sobic.004G215100 expressed protein -
6 Sobic.001G164500 MYB family transcription factor, putative, expressed -
7 Sobic.001G379100 basic helix-loop-helix domain containing protein, expressed -
8 Sobic.002G280500 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.003G055800 expressed protein -
10 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
11 Sobic.004G115000 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
13 Sobic.001G448000 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
14 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
15 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
16 Sobic.010G218800 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
18 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
19 Sobic.010G096200 expressed protein -
20 Sobic.004G139900 ATP binding, related, putative, expressed -


Gene co-expression network
sample Sobic010G071300 Sobic010G071300 Sobic004G222300 Sobic004G222300 Sobic010G071300--Sobic004G222300 Sobic006G069000 Sobic006G069000 Sobic010G071300--Sobic006G069000 Sobic005G047900 Sobic005G047900 Sobic010G071300--Sobic005G047900 Sobic003G148400 Sobic003G148400 Sobic010G071300--Sobic003G148400 Sobic004G215100 Sobic004G215100 Sobic010G071300--Sobic004G215100 Sobic001G164500 Sobic001G164500 Sobic010G071300--Sobic001G164500 Sobic001G379100 Sobic001G379100 Sobic010G071300--Sobic001G379100 Sobic002G280500 Sobic002G280500 Sobic010G071300--Sobic002G280500 Sobic003G055800 Sobic003G055800 Sobic010G071300--Sobic003G055800 Sobic004G222300--Sobic010G071300 Sobic005G102800 Sobic005G102800 Sobic004G222300--Sobic005G102800 Sobic004G222300--Sobic005G047900 Sobic004G269100 Sobic004G269100 Sobic004G222300--Sobic004G269100 Sobic001G448000 Sobic001G448000 Sobic004G222300--Sobic001G448000 Sobic004G115000 Sobic004G115000 Sobic004G222300--Sobic004G115000 Sobic003G250000 Sobic003G250000 Sobic004G222300--Sobic003G250000 Sobic004G222300--Sobic003G148400 Sobic004G222300--Sobic004G215100 Sobic006G069000--Sobic010G071300 Sobic004G353900 Sobic004G353900 Sobic006G069000--Sobic004G353900 Sobic004G066300 Sobic004G066300 Sobic006G069000--Sobic004G066300 Sobic001G030200 Sobic001G030200 Sobic006G069000--Sobic001G030200 Sobic009G010900 Sobic009G010900 Sobic006G069000--Sobic009G010900 Sobic003G100200 Sobic003G100200 Sobic006G069000--Sobic003G100200 Sobic004G297800 Sobic004G297800 Sobic006G069000--Sobic004G297800 Sobic004G001200 Sobic004G001200 Sobic006G069000--Sobic004G001200 Sobic006G069000--Sobic004G222300 Sobic005G047900--Sobic004G222300 Sobic009G119800 Sobic009G119800 Sobic005G047900--Sobic009G119800 Sobic004G134801 Sobic004G134801 Sobic005G047900--Sobic004G134801 Sobic005G147600 Sobic005G147600 Sobic005G047900--Sobic005G147600 Sobic002G366300 Sobic002G366300 Sobic005G047900--Sobic002G366300 Sobic005G047900--Sobic005G102800 Sobic006G083900 Sobic006G083900 Sobic005G047900--Sobic006G083900 Sobic001G381000 Sobic001G381000 Sobic005G047900--Sobic001G381000 Sobic001G122600 Sobic001G122600 Sobic005G047900--Sobic001G122600 Sobic003G148400--Sobic001G379100 Sobic003G148400--Sobic003G250000 Sobic004G253500 Sobic004G253500 Sobic003G148400--Sobic004G253500 Sobic003G148400--Sobic001G164500 Sobic010G096200 Sobic010G096200 Sobic003G148400--Sobic010G096200 Sobic002G225000 Sobic002G225000 Sobic003G148400--Sobic002G225000 Sobic003G259500 Sobic003G259500 Sobic003G148400--Sobic003G259500 Sobic009G002900 Sobic009G002900 Sobic003G148400--Sobic009G002900 Sobic008G075200 Sobic008G075200 Sobic003G148400--Sobic008G075200 Sobic003G251700 Sobic003G251700 Sobic004G215100--Sobic003G251700 Sobic006G172000 Sobic006G172000 Sobic004G215100--Sobic006G172000 Sobic004G115700 Sobic004G115700 Sobic004G215100--Sobic004G115700 Sobic004G215100--Sobic004G269100 Sobic001G493100 Sobic001G493100 Sobic004G215100--Sobic001G493100 Sobic004G215100--Sobic001G448000 Sobic007G097100 Sobic007G097100 Sobic004G215100--Sobic007G097100 Sobic002G378600 Sobic002G378600 Sobic004G215100--Sobic002G378600 Sobic010G106100 Sobic010G106100 Sobic004G215100--Sobic010G106100 Sobic001G164500--Sobic001G379100 Sobic006G233600 Sobic006G233600 Sobic001G164500--Sobic006G233600 Sobic001G164500--Sobic010G096200 Sobic001G164500--Sobic002G280500 Sobic001G164500--Sobic003G148400 Sobic004G109000 Sobic004G109000 Sobic001G164500--Sobic004G109000 Sobic001G478100 Sobic001G478100 Sobic001G164500--Sobic001G478100 Sobic003G333700 Sobic003G333700 Sobic001G164500--Sobic003G333700 Sobic006G238100 Sobic006G238100 Sobic001G164500--Sobic006G238100 Sobic001G379100--Sobic001G164500 Sobic001G379100--Sobic010G096200 Sobic001G379100--Sobic003G148400 Sobic001G379100--Sobic002G280500 Sobic001G127700 Sobic001G127700 Sobic001G379100--Sobic001G127700 Sobic006G172700 Sobic006G172700 Sobic001G379100--Sobic006G172700 Sobic001G379100--Sobic002G225000 Sobic004G060700 Sobic004G060700 Sobic001G379100--Sobic004G060700 Sobic001G379100--Sobic004G109000 Sobic006G238000 Sobic006G238000 Sobic002G280500--Sobic006G238000 Sobic004G291500 Sobic004G291500 Sobic002G280500--Sobic004G291500 Sobic008G084200 Sobic008G084200 Sobic002G280500--Sobic008G084200 Sobic002G280500--Sobic001G379100 Sobic009G059100 Sobic009G059100 Sobic002G280500--Sobic009G059100 Sobic002G025300 Sobic002G025300 Sobic002G280500--Sobic002G025300 Sobic010G124200 Sobic010G124200 Sobic002G280500--Sobic010G124200 Sobic002G280500--Sobic006G172700 Sobic002G280500--Sobic004G001200 Sobic003G055800--Sobic004G269100 Sobic003G222800 Sobic003G222800 Sobic003G055800--Sobic003G222800 Sobic002G259200 Sobic002G259200 Sobic003G055800--Sobic002G259200 Sobic003G041900 Sobic003G041900 Sobic003G055800--Sobic003G041900 Sobic003G055800--Sobic003G250000 Sobic001G461800 Sobic001G461800 Sobic003G055800--Sobic001G461800 Sobic003G291000 Sobic003G291000 Sobic003G055800--Sobic003G291000 Sobic005G092700 Sobic005G092700 Sobic003G055800--Sobic005G092700 Sobic010G097000 Sobic010G097000 Sobic003G055800--Sobic010G097000
Octagon: transcription factors


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