Gene annotation
| Transcriptome id | Sobic.007G165500.2 |
|---|---|
| Synonym | Sb07g023840 |
| Functional annotation | MATE efflux family protein, putative, expressed |
| UniProt | A0A1Z5RAF7 |
| Pfam | PF01554 |
| Panther DB | PTHR11206 PTHR11206:SF131 |
| NCBI CDD | KOG1347; Uncharacterized membrane protein, predicted efflux pump |
| KEGG Orthology | K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| Gene Ontology | GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport |
Orthologs (automatic annotation)
| TAIR | AT4G00350 : MATE efflux family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g44870.1 : MATE efflux family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030519 , Zm00025a032766 |
| Brachypodium | KQK01430 |
| Barley | HORVU0Hr1G022320.3 , HORVU0Hr1G022320.2 , HORVU0Hr1G022320.1 , HORVU6Hr1G091840.2 , HORVU6Hr1G091840.1 , HORVU6Hr1G091850.1 , HORVU6Hr1G091850.3 , HORVU6Hr1G091850.2 , HORVU7Hr1G049240.4 , HORVU7Hr1G049240.5 , HORVU7Hr1G049240.6 , HORVU7Hr1G049240.1 , HORVU7Hr1G049240.2 , HORVU7Hr1G049240.3 |
| Wheat | TraesCS7B02G032100 , TraesCS6D02G384400 , TraesCS6A02G400200 , TraesCS7D02G130700 , TraesCS7D02G130800 , TraesCS7D02G240600 , TraesCS7A02G241600 , TraesCS7B02G137200 , TraesCS7D02G469000 , TraesCS7B02G384300 , TraesCS7A02G131600 , TraesCS7A02G131500 , TraesCS7A02G131500 , TraesCS7A02G482100 , TraesCS2B02G612900 , TraesCS6B02G440400 , TraesCS7B02G032300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G297900 | CDGSH iron sulfur domain-containing protein 1, putative, expressed | - |
| 2 | Sobic.009G238300 | expressed protein | - |
| 3 | Sobic.004G326500 | PAP fibrillin family domain containing protein, expressed | - |
| 4 | Sobic.002G267900 | expressed protein | - |
| 5 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 6 | Sobic.002G353300 | Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed | K13789: geranylgeranyl diphosphate synthase, type II |
| 7 | Sobic.004G020300 | expressed protein | - |
| 8 | Sobic.008G172700 | OsDegp15 - Putative Deg protease homologue, expressed | - |
| 9 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 10 | Sobic.008G112300 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed | - |
| 11 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 12 | Sobic.004G251500 | -(PubMedID : 29017446)@arsenate reductase, putative, expressed | - |
| 13 | Sobic.001G221300 | alcohol oxidase, putative, expressed | K17756: long-chain-alcohol oxidase |
| 14 | Sobic.009G131800 | peptide methionine sulfoxide reductase msrB, putative, expressed | K07305: peptide-methionine (R)-S-oxide reductase |
| 15 | Sobic.003G386300 | expressed protein | - |
| 16 | Sobic.004G055000 | peptidase, cysteine peptidase active site, putative, expressed | - |
| 17 | Sobic.004G164100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 18 | Sobic.009G130800 | tat pathway signal sequence family protein, expressed | - |
| 19 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
| 20 | Sobic.002G198000 | CRR6, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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