Gene annotation
Transcriptome id Sobic.004G235100.1
Synonym Sb04g027800, EMB2453, ATPPR5
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A194YR93
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF490
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39620 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g51480.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033183
Brachypodium KQK01892
Barley HORVU7Hr1G033940.10 , HORVU7Hr1G033940.13 , HORVU7Hr1G033940.12 , HORVU7Hr1G033940.2 , HORVU7Hr1G033940.3 , HORVU7Hr1G033940.1 , HORVU7Hr1G033940.4 , HORVU7Hr1G033940.5 , HORVU7Hr1G033940.9 , HORVU6Hr1G075250.1 , HORVU6Hr1G075250.3 , HORVU6Hr1G075250.2 , HORVU6Hr1G075250.5 , HORVU6Hr1G075250.4 , HORVU6Hr1G075250.7 , HORVU6Hr1G075250.6
Wheat TraesCS6D02G282900 , TraesCS6B02G332800 , TraesCS6B02G332800 , TraesCS6A02G303300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G018900 RNA recognition motif containing protein, putative, expressed -
2 Sobic.009G191900 expressed protein -
3 Sobic.006G049200 violaxanthin de-epoxidase, putative, expressed K09839: VDE, violaxanthin de-epoxidase
4 Sobic.008G142400 cycloartenol synthase, putative, expressed -
5 Sobic.001G531800 dihydrodipicolinate reductase, putative, expressed K16908: chloroplast NAD(P)H dehydrogenase
6 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
7 Sobic.005G110433 - -
8 Sobic.007G122400 HOTHEAD precursor, putative, expressed K15403: ACE, fatty acid omega-hydroxy dehydrogenase
9 Sobic.009G210800 expressed protein -
10 Sobic.003G214800 pentatricopeptide, putative, expressed -
11 Sobic.003G345300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.006G204600 pentatricopeptide, putative, expressed -
13 Sobic.002G357300 expressed protein -
14 Sobic.001G394000 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.006G207700 containing DUF163, putative, expressed K00783: 23S rRNA (pseudouridine1915-N3)-methyltransferase
16 Sobic.001G441300 expressed protein -
17 Sobic.010G001400 Transferase family protein (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
18 Sobic.010G005200 expressed protein -
19 Sobic.003G263450 - -
20 Sobic.002G176300 RING finger protein, putative, expressed -


Gene co-expression network
sample Sobic004G235100 Sobic004G235100 Sobic007G018900 Sobic007G018900 Sobic004G235100--Sobic007G018900 Sobic009G191900 Sobic009G191900 Sobic004G235100--Sobic009G191900 Sobic006G049200 Sobic006G049200 Sobic004G235100--Sobic006G049200 Sobic008G142400 Sobic008G142400 Sobic004G235100--Sobic008G142400 Sobic001G531800 Sobic001G531800 Sobic004G235100--Sobic001G531800 Sobic004G342500 Sobic004G342500 Sobic004G235100--Sobic004G342500 Sobic005G110433 Sobic005G110433 Sobic004G235100--Sobic005G110433 Sobic007G122400 Sobic007G122400 Sobic004G235100--Sobic007G122400 Sobic009G210800 Sobic009G210800 Sobic004G235100--Sobic009G210800 Sobic007G018900--Sobic009G191900 Sobic007G018900--Sobic004G235100 Sobic004G250000 Sobic004G250000 Sobic007G018900--Sobic004G250000 Sobic004G206000 Sobic004G206000 Sobic007G018900--Sobic004G206000 Sobic006G053601 Sobic006G053601 Sobic007G018900--Sobic006G053601 Sobic009G148400 Sobic009G148400 Sobic007G018900--Sobic009G148400 Sobic006G097600 Sobic006G097600 Sobic007G018900--Sobic006G097600 Sobic010G098800 Sobic010G098800 Sobic007G018900--Sobic010G098800 SobicK032600 SobicK032600 Sobic007G018900--SobicK032600 Sobic009G191900--Sobic007G018900 Sobic009G191900--Sobic004G235100 Sobic009G191900--Sobic007G122400 Sobic009G191900--Sobic005G110433 Sobic009G191900--Sobic009G148400 Sobic003G341900 Sobic003G341900 Sobic009G191900--Sobic003G341900 Sobic001G527550 Sobic001G527550 Sobic009G191900--Sobic001G527550 Sobic004G334501 Sobic004G334501 Sobic009G191900--Sobic004G334501 SobicK031300 SobicK031300 Sobic009G191900--SobicK031300 Sobic006G122500 Sobic006G122500 Sobic006G049200--Sobic006G122500 Sobic010G019200 Sobic010G019200 Sobic006G049200--Sobic010G019200 Sobic006G049200--Sobic004G235100 Sobic006G049200--Sobic007G018900 Sobic006G207700 Sobic006G207700 Sobic006G049200--Sobic006G207700 Sobic006G049200--Sobic004G342500 Sobic008G094150 Sobic008G094150 Sobic006G049200--Sobic008G094150 Sobic006G049200--Sobic009G191900 Sobic003G080000 Sobic003G080000 Sobic006G049200--Sobic003G080000 Sobic002G311700 Sobic002G311700 Sobic008G142400--Sobic002G311700 Sobic002G052600 Sobic002G052600 Sobic008G142400--Sobic002G052600 Sobic008G142400--Sobic001G531800 Sobic008G142400--Sobic004G235100 Sobic008G142400--Sobic007G122400 Sobic006G253900 Sobic006G253900 Sobic008G142400--Sobic006G253900 Sobic005G029900 Sobic005G029900 Sobic008G142400--Sobic005G029900 Sobic003G214800 Sobic003G214800 Sobic008G142400--Sobic003G214800 Sobic009G196001 Sobic009G196001 Sobic008G142400--Sobic009G196001 Sobic009G253450 Sobic009G253450 Sobic001G531800--Sobic009G253450 Sobic009G178000 Sobic009G178000 Sobic001G531800--Sobic009G178000 Sobic009G184450 Sobic009G184450 Sobic001G531800--Sobic009G184450 Sobic008G167900 Sobic008G167900 Sobic001G531800--Sobic008G167900 Sobic002G231700 Sobic002G231700 Sobic001G531800--Sobic002G231700 Sobic003G076300 Sobic003G076300 Sobic001G531800--Sobic003G076300 Sobic001G249000 Sobic001G249000 Sobic001G531800--Sobic001G249000 Sobic003G051300 Sobic003G051300 Sobic001G531800--Sobic003G051300 Sobic001G531800--Sobic008G142400 Sobic006G204600 Sobic006G204600 Sobic004G342500--Sobic006G204600 Sobic010G279100 Sobic010G279100 Sobic004G342500--Sobic010G279100 Sobic002G199000 Sobic002G199000 Sobic004G342500--Sobic002G199000 Sobic001G410700 Sobic001G410700 Sobic004G342500--Sobic001G410700 Sobic004G342500--Sobic004G235100 Sobic004G342500--Sobic003G214800 Sobic001G455500 Sobic001G455500 Sobic004G342500--Sobic001G455500 Sobic004G342500--Sobic006G049200 Sobic004G342500--Sobic006G122500 Sobic005G110433--Sobic009G191900 Sobic006G231266 Sobic006G231266 Sobic005G110433--Sobic006G231266 Sobic006G135550 Sobic006G135550 Sobic005G110433--Sobic006G135550 Sobic001G146700 Sobic001G146700 Sobic005G110433--Sobic001G146700 Sobic005G110433--Sobic004G235100 Sobic005G110433--Sobic007G122400 Sobic007G015700 Sobic007G015700 Sobic005G110433--Sobic007G015700 Sobic005G161750 Sobic005G161750 Sobic005G110433--Sobic005G161750 Sobic001G320800 Sobic001G320800 Sobic005G110433--Sobic001G320800 Sobic007G122400--Sobic003G341900 Sobic010G001400 Sobic010G001400 Sobic007G122400--Sobic010G001400 Sobic002G176700 Sobic002G176700 Sobic007G122400--Sobic002G176700 Sobic007G122400--Sobic009G191900 Sobic001G145550 Sobic001G145550 Sobic007G122400--Sobic001G145550 Sobic009G173700 Sobic009G173700 Sobic007G122400--Sobic009G173700 Sobic007G149500 Sobic007G149500 Sobic007G122400--Sobic007G149500 Sobic001G100300 Sobic001G100300 Sobic007G122400--Sobic001G100300 Sobic009G213150 Sobic009G213150 Sobic007G122400--Sobic009G213150 Sobic007G013700 Sobic007G013700 Sobic009G210800--Sobic007G013700 Sobic006G233900 Sobic006G233900 Sobic009G210800--Sobic006G233900 Sobic007G083700 Sobic007G083700 Sobic009G210800--Sobic007G083700 Sobic009G078300 Sobic009G078300 Sobic009G210800--Sobic009G078300 Sobic002G168750 Sobic002G168750 Sobic009G210800--Sobic002G168750 Sobic001G376332 Sobic001G376332 Sobic009G210800--Sobic001G376332 Sobic002G168700 Sobic002G168700 Sobic009G210800--Sobic002G168700 Sobic001G235600 Sobic001G235600 Sobic009G210800--Sobic001G235600 Sobic009G078401 Sobic009G078401 Sobic009G210800--Sobic009G078401
Octagon: transcription factors


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