Gene annotation
Transcriptome id Sobic.006G204600.1
Synonym Sb06g027570
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YF72
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF521
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22150 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g51350.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a009922
Brachypodium KQJ84429
Barley HORVU2Hr1G101470.1 , HORVU2Hr1G101470.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G199000 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed K00592: [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
2 Sobic.002G331100 peptide chain release factor protein, putative, expressed K02836: peptide chain release factor 2
3 Sobic.010G279100 expressed protein -
4 Sobic.004G357300 uncharacterized ACR, COG1399 family protein, expressed -
5 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
6 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
7 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
9 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
10 Sobic.006G280800 expressed protein -
11 Sobic.010G009466 - -
12 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
13 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
14 Sobic.001G058600 BT1 family protein, putative, expressed -
15 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
16 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
17 Sobic.004G025400 phosphatidate cytidylyltransferase, putative, expressed -
18 Sobic.003G439000 rubredoxin family protein, putative, expressed -
19 Sobic.004G179200 expressed protein -
20 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54


Gene co-expression network
sample Sobic006G204600 Sobic006G204600 Sobic002G199000 Sobic002G199000 Sobic006G204600--Sobic002G199000 Sobic002G331100 Sobic002G331100 Sobic006G204600--Sobic002G331100 Sobic010G279100 Sobic010G279100 Sobic006G204600--Sobic010G279100 Sobic004G357300 Sobic004G357300 Sobic006G204600--Sobic004G357300 Sobic010G002000 Sobic010G002000 Sobic006G204600--Sobic010G002000 Sobic004G342500 Sobic004G342500 Sobic006G204600--Sobic004G342500 Sobic001G455500 Sobic001G455500 Sobic006G204600--Sobic001G455500 Sobic001G001300 Sobic001G001300 Sobic006G204600--Sobic001G001300 Sobic001G054100 Sobic001G054100 Sobic006G204600--Sobic001G054100 Sobic004G269600 Sobic004G269600 Sobic002G199000--Sobic004G269600 Sobic002G199000--Sobic006G204600 Sobic007G155600 Sobic007G155600 Sobic002G199000--Sobic007G155600 Sobic004G179200 Sobic004G179200 Sobic002G199000--Sobic004G179200 Sobic006G280800 Sobic006G280800 Sobic002G199000--Sobic006G280800 Sobic002G199000--Sobic010G279100 Sobic003G324700 Sobic003G324700 Sobic002G199000--Sobic003G324700 Sobic002G199000--Sobic001G054100 Sobic005G143500 Sobic005G143500 Sobic002G199000--Sobic005G143500 Sobic002G331100--Sobic006G204600 Sobic001G410700 Sobic001G410700 Sobic002G331100--Sobic001G410700 Sobic001G016100 Sobic001G016100 Sobic002G331100--Sobic001G016100 Sobic002G331100--Sobic001G001300 Sobic002G331100--Sobic010G002000 Sobic002G331100--Sobic002G199000 Sobic009G121000 Sobic009G121000 Sobic002G331100--Sobic009G121000 Sobic002G331100--Sobic006G280800 Sobic001G016201 Sobic001G016201 Sobic002G331100--Sobic001G016201 Sobic003G214800 Sobic003G214800 Sobic010G279100--Sobic003G214800 Sobic010G279100--Sobic002G199000 Sobic010G279100--Sobic001G455500 Sobic010G279100--Sobic006G204600 Sobic001G058600 Sobic001G058600 Sobic010G279100--Sobic001G058600 Sobic003G310800 Sobic003G310800 Sobic010G279100--Sobic003G310800 Sobic003G439000 Sobic003G439000 Sobic010G279100--Sobic003G439000 Sobic010G279100--Sobic004G342500 Sobic010G279100--Sobic004G357300 Sobic009G148500 Sobic009G148500 Sobic004G357300--Sobic009G148500 Sobic006G210400 Sobic006G210400 Sobic004G357300--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic004G357300--Sobic002G297400 Sobic004G357300--Sobic010G002000 Sobic004G357300--Sobic001G001300 Sobic004G357300--Sobic001G455500 Sobic005G002900 Sobic005G002900 Sobic004G357300--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic004G357300--Sobic001G469933 Sobic003G141100 Sobic003G141100 Sobic004G357300--Sobic003G141100 Sobic003G094350 Sobic003G094350 Sobic010G002000--Sobic003G094350 Sobic008G039600 Sobic008G039600 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic001G500600 Sobic001G500600 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic010G002000--Sobic009G148500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic010G002000--Sobic003G141100 Sobic004G342500--Sobic006G204600 Sobic004G342500--Sobic010G279100 Sobic004G342500--Sobic002G199000 Sobic004G342500--Sobic001G410700 Sobic004G235100 Sobic004G235100 Sobic004G342500--Sobic004G235100 Sobic004G342500--Sobic003G214800 Sobic004G342500--Sobic001G455500 Sobic006G049200 Sobic006G049200 Sobic004G342500--Sobic006G049200 Sobic006G122500 Sobic006G122500 Sobic004G342500--Sobic006G122500 Sobic001G455500--Sobic003G439000 Sobic001G455500--Sobic004G179200 Sobic001G455500--Sobic002G297400 Sobic001G186200 Sobic001G186200 Sobic001G455500--Sobic001G186200 Sobic001G006000 Sobic001G006000 Sobic001G455500--Sobic001G006000 Sobic001G455500--Sobic004G357300 Sobic001G469900 Sobic001G469900 Sobic001G455500--Sobic001G469900 Sobic001G455500--Sobic006G210400 Sobic001G455500--Sobic001G001300 Sobic001G001300--Sobic006G280800 Sobic003G085100 Sobic003G085100 Sobic001G001300--Sobic003G085100 Sobic003G160800 Sobic003G160800 Sobic001G001300--Sobic003G160800 Sobic002G133900 Sobic002G133900 Sobic001G001300--Sobic002G133900 Sobic001G001300--Sobic009G148500 Sobic005G111550 Sobic005G111550 Sobic001G001300--Sobic005G111550 Sobic003G287900 Sobic003G287900 Sobic001G001300--Sobic003G287900 Sobic001G001300--Sobic001G500600 Sobic001G134700 Sobic001G134700 Sobic001G001300--Sobic001G134700 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400
Octagon: transcription factors


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