Gene annotation
Transcriptome id Sobic.010G009466.1
Synonym -
Functional annotation -
UniProt A0A1W0VR10
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF321
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27270 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g02120.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050263
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
3 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
4 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
5 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
6 Sobic.009G056700 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3
7 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
8 Sobic.009G121000 expressed protein -
9 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
10 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
11 Sobic.001G048400 pheophorbide a oxygenase, chloroplast precursor, putative, expressed -
12 Sobic.008G006100 MATE efflux protein, putative, expressed -
13 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
14 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
15 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
16 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
17 Sobic.006G280800 expressed protein -
18 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
19 Sobic.004G211600 psaB translation factor, putative, expressed -
20 Sobic.004G298900 OR, putative, expressed -


Gene co-expression network
sample Sobic010G009466 Sobic010G009466 Sobic003G160800 Sobic003G160800 Sobic010G009466--Sobic003G160800 Sobic003G141100 Sobic003G141100 Sobic010G009466--Sobic003G141100 Sobic006G210400 Sobic006G210400 Sobic010G009466--Sobic006G210400 Sobic004G328400 Sobic004G328400 Sobic010G009466--Sobic004G328400 Sobic001G001300 Sobic001G001300 Sobic010G009466--Sobic001G001300 Sobic009G056700 Sobic009G056700 Sobic010G009466--Sobic009G056700 Sobic003G372900 Sobic003G372900 Sobic010G009466--Sobic003G372900 Sobic009G121000 Sobic009G121000 Sobic010G009466--Sobic009G121000 Sobic004G179400 Sobic004G179400 Sobic010G009466--Sobic004G179400 Sobic004G336200 Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic001G500600 Sobic001G500600 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic006G010900 Sobic006G010900 Sobic006G210400--Sobic006G010900 Sobic007G085800 Sobic007G085800 Sobic006G210400--Sobic007G085800 Sobic006G256600 Sobic006G256600 Sobic006G210400--Sobic006G256600 Sobic006G210400--Sobic003G141100 Sobic002G297400 Sobic002G297400 Sobic006G210400--Sobic002G297400 Sobic006G210400--Sobic003G387100 Sobic001G309300 Sobic001G309300 Sobic006G210400--Sobic001G309300 Sobic010G255100 Sobic010G255100 Sobic006G210400--Sobic010G255100 Sobic001G124800 Sobic001G124800 Sobic006G210400--Sobic001G124800 Sobic004G328400--Sobic003G141100 Sobic004G328400--Sobic003G232700 Sobic004G328400--Sobic003G372900 Sobic004G328400--Sobic001G500600 Sobic004G328400--Sobic004G336200 Sobic004G328400--Sobic001G054100 Sobic003G301300 Sobic003G301300 Sobic004G328400--Sobic003G301300 Sobic003G150800 Sobic003G150800 Sobic004G328400--Sobic003G150800 Sobic004G328400--Sobic003G160800 Sobic006G280800 Sobic006G280800 Sobic001G001300--Sobic006G280800 Sobic003G085100 Sobic003G085100 Sobic001G001300--Sobic003G085100 Sobic001G001300--Sobic003G160800 Sobic002G133900 Sobic002G133900 Sobic001G001300--Sobic002G133900 Sobic001G001300--Sobic009G148500 Sobic005G111550 Sobic005G111550 Sobic001G001300--Sobic005G111550 Sobic003G287900 Sobic003G287900 Sobic001G001300--Sobic003G287900 Sobic001G001300--Sobic001G500600 Sobic001G001300--Sobic001G134700 Sobic003G398800 Sobic003G398800 Sobic009G056700--Sobic003G398800 Sobic003G431700 Sobic003G431700 Sobic009G056700--Sobic003G431700 Sobic009G056700--Sobic002G112400 Sobic009G056700--Sobic007G103400 Sobic003G306200 Sobic003G306200 Sobic009G056700--Sobic003G306200 Sobic008G006100 Sobic008G006100 Sobic009G056700--Sobic008G006100 Sobic002G275300 Sobic002G275300 Sobic009G056700--Sobic002G275300 Sobic002G298800 Sobic002G298800 Sobic009G056700--Sobic002G298800 Sobic001G128600 Sobic001G128600 Sobic009G056700--Sobic001G128600 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic001G083100 Sobic001G083100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G094350 Sobic003G094350 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic003G372900--Sobic006G280800 Sobic010G043800 Sobic010G043800 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic001G540600 Sobic001G540600 Sobic004G179400--Sobic001G540600 Sobic001G060500 Sobic001G060500 Sobic004G179400--Sobic001G060500 Sobic009G207900 Sobic009G207900 Sobic004G179400--Sobic009G207900 Sobic002G028400 Sobic002G028400 Sobic004G179400--Sobic002G028400 Sobic008G074000 Sobic008G074000 Sobic004G179400--Sobic008G074000 Sobic003G125900 Sobic003G125900 Sobic004G179400--Sobic003G125900 Sobic001G378100 Sobic001G378100 Sobic004G179400--Sobic001G378100 Sobic009G170200 Sobic009G170200 Sobic004G179400--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic004G179400--Sobic001G504400
Octagon: transcription factors


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