Gene annotation
Transcriptome id Sobic.002G331100.1
Synonym Sb02g035755, ATPRFB, HCF109
Functional annotation peptide chain release factor protein, putative, expressed
UniProt A0A1B6QET8
Pfam PF00472 PF03462
Panther DB PTHR11075 PTHR11075:SF46
NCBI CDD KOG2726; Mitochondrial polypeptide chain release factor
KEGG Orthology K02836; peptide chain release factor 2
Gene Ontology GO:0006415; translational termination GO:0003747translation release factor activity GO:0016149translation release factor activity, codon specific GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT5G36170 : high chlorophyll fluorescent 109
RAP-DB (Rice) LOC_Os07g36250.1 : peptide chain release factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a048380 , Zm00025a025883 , Zm00025a036748 , Zm00025a019893 , Zm00025a021595 , Zm00025a048330 , Zm00025a014223 , Zm00025a040610 , Zm00025a040612 , Zm00025a053885
Brachypodium KQK15852 , KQK15853
Barley HORVU2Hr1G043310.11 , HORVU2Hr1G043310.10 , HORVU2Hr1G043310.13 , HORVU2Hr1G043310.12 , HORVU2Hr1G043310.15 , HORVU2Hr1G043310.14 , HORVU2Hr1G043310.9 , HORVU2Hr1G043310.8 , HORVU2Hr1G043310.5 , HORVU2Hr1G043310.4 , HORVU2Hr1G043310.7 , HORVU2Hr1G043310.6 , HORVU2Hr1G043310.1 , HORVU2Hr1G043310.3 , HORVU2Hr1G043310.2
Wheat TraesCS2A02G213600 , TraesCS2B02G238500 , TraesCS2B02G238500 , TraesCS2A02G213600
Populus -


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cDNA sequences
Sobic.002G331100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G204600 pentatricopeptide, putative, expressed -
2 Sobic.001G410700 PPR repeat domain containing protein, putative, expressed -
3 Sobic.001G016100 pentatricopeptide, putative, expressed -
4 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
5 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
6 Sobic.002G199000 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed K00592: [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
7 Sobic.009G121000 expressed protein -
8 Sobic.006G280800 expressed protein -
9 Sobic.001G016201 - -
10 Sobic.009G024300 inner membrane protein alx, putative, expressed -
11 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
12 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.003G290800 starch binding domain containing protein, putative, expressed -
15 Sobic.010G009466 - -
16 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
17 Sobic.010G035400 expressed protein -
18 Sobic.010G201600 tic21, putative, expressed -
19 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
20 Sobic.003G203000 high light inducible protein, putative, expressed -


Gene co-expression network
sample Sobic002G331100 Sobic002G331100 Sobic006G204600 Sobic006G204600 Sobic002G331100--Sobic006G204600 Sobic001G410700 Sobic001G410700 Sobic002G331100--Sobic001G410700 Sobic001G016100 Sobic001G016100 Sobic002G331100--Sobic001G016100 Sobic001G001300 Sobic001G001300 Sobic002G331100--Sobic001G001300 Sobic010G002000 Sobic010G002000 Sobic002G331100--Sobic010G002000 Sobic002G199000 Sobic002G199000 Sobic002G331100--Sobic002G199000 Sobic009G121000 Sobic009G121000 Sobic002G331100--Sobic009G121000 Sobic006G280800 Sobic006G280800 Sobic002G331100--Sobic006G280800 Sobic001G016201 Sobic001G016201 Sobic002G331100--Sobic001G016201 Sobic006G204600--Sobic002G199000 Sobic006G204600--Sobic002G331100 Sobic010G279100 Sobic010G279100 Sobic006G204600--Sobic010G279100 Sobic004G357300 Sobic004G357300 Sobic006G204600--Sobic004G357300 Sobic006G204600--Sobic010G002000 Sobic004G342500 Sobic004G342500 Sobic006G204600--Sobic004G342500 Sobic001G455500 Sobic001G455500 Sobic006G204600--Sobic001G455500 Sobic006G204600--Sobic001G001300 Sobic001G054100 Sobic001G054100 Sobic006G204600--Sobic001G054100 Sobic001G410700--Sobic002G331100 Sobic001G410700--Sobic002G199000 Sobic001G410700--Sobic006G204600 Sobic001G536901 Sobic001G536901 Sobic001G410700--Sobic001G536901 Sobic010G009466 Sobic010G009466 Sobic001G410700--Sobic010G009466 Sobic001G410700--Sobic004G342500 Sobic001G410700--Sobic001G001300 Sobic003G160800 Sobic003G160800 Sobic001G410700--Sobic003G160800 Sobic001G410700--Sobic009G121000 Sobic001G016100--Sobic009G121000 Sobic002G028400 Sobic002G028400 Sobic001G016100--Sobic002G028400 Sobic001G016100--Sobic001G054100 Sobic003G094350 Sobic003G094350 Sobic001G016100--Sobic003G094350 Sobic001G016100--Sobic010G002000 Sobic002G133900 Sobic002G133900 Sobic001G016100--Sobic002G133900 Sobic010G043800 Sobic010G043800 Sobic001G016100--Sobic010G043800 Sobic003G372900 Sobic003G372900 Sobic001G016100--Sobic003G372900 Sobic001G028100 Sobic001G028100 Sobic001G016100--Sobic001G028100 Sobic001G001300--Sobic006G280800 Sobic003G085100 Sobic003G085100 Sobic001G001300--Sobic003G085100 Sobic001G001300--Sobic003G160800 Sobic001G001300--Sobic002G133900 Sobic009G148500 Sobic009G148500 Sobic001G001300--Sobic009G148500 Sobic005G111550 Sobic005G111550 Sobic001G001300--Sobic005G111550 Sobic003G287900 Sobic003G287900 Sobic001G001300--Sobic003G287900 Sobic001G500600 Sobic001G500600 Sobic001G001300--Sobic001G500600 Sobic001G134700 Sobic001G134700 Sobic001G001300--Sobic001G134700 Sobic010G002000--Sobic003G094350 Sobic008G039600 Sobic008G039600 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic003G141100 Sobic003G141100 Sobic010G002000--Sobic003G141100 Sobic004G269600 Sobic004G269600 Sobic002G199000--Sobic004G269600 Sobic002G199000--Sobic006G204600 Sobic007G155600 Sobic007G155600 Sobic002G199000--Sobic007G155600 Sobic004G179200 Sobic004G179200 Sobic002G199000--Sobic004G179200 Sobic002G199000--Sobic006G280800 Sobic002G199000--Sobic010G279100 Sobic003G324700 Sobic003G324700 Sobic002G199000--Sobic003G324700 Sobic002G199000--Sobic001G054100 Sobic002G199000--Sobic005G143500 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic007G103400 Sobic007G103400 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic006G280800--Sobic001G001300 Sobic006G280800--Sobic001G500600 Sobic006G280800--Sobic003G094350 Sobic004G333400 Sobic004G333400 Sobic006G280800--Sobic004G333400 Sobic003G070900 Sobic003G070900 Sobic006G280800--Sobic003G070900 Sobic006G280800--Sobic003G372900 Sobic006G280800--Sobic002G133900 Sobic008G006100 Sobic008G006100 Sobic006G280800--Sobic008G006100 Sobic006G280800--Sobic001G134700 Sobic001G420400 Sobic001G420400 Sobic001G016201--Sobic001G420400 Sobic001G016201--Sobic009G121000 Sobic010G153201 Sobic010G153201 Sobic001G016201--Sobic010G153201 Sobic001G016201--Sobic001G016100 Sobic005G118400 Sobic005G118400 Sobic001G016201--Sobic005G118400 Sobic003G332700 Sobic003G332700 Sobic001G016201--Sobic003G332700 Sobic007G185700 Sobic007G185700 Sobic001G016201--Sobic007G185700 Sobic002G006600 Sobic002G006600 Sobic001G016201--Sobic002G006600 Sobic003G442700 Sobic003G442700 Sobic001G016201--Sobic003G442700
Octagon: transcription factors


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