Gene annotation
Transcriptome id Sobic.002G199000.1,Sobic.002G199000.2
Synonym Sb02g024510
Functional annotation ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
UniProt C5XC87 , A0A1B6QCI5
Pfam PF00856 PF09273
Panther DB PTHR13271 PTHR13271:SF29
NCBI CDD KOG1337; N-methyltransferase
KEGG Orthology K00592; [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G14030 : Rubisco methyltransferase family protein
RAP-DB (Rice) LOC_Os09g24530.1 : ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a046949
Brachypodium KQJ90199
Barley HORVU5Hr1G066350.4 , HORVU5Hr1G066350.3 , HORVU5Hr1G066350.2 , HORVU5Hr1G066350.1
Wheat TraesCS5B02G228300 , TraesCS5B02G228300 , TraesCS5A02G229500 , TraesCS5A02G229500 , TraesCS5D02G238000 , TraesCS5D02G238000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G269600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
2 Sobic.006G204600 pentatricopeptide, putative, expressed -
3 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
4 Sobic.004G179200 expressed protein -
5 Sobic.006G280800 expressed protein -
6 Sobic.010G279100 expressed protein -
7 Sobic.003G324700 expressed protein -
8 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
9 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
10 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
11 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
12 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
13 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
14 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
15 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
16 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
17 Sobic.001G058600 BT1 family protein, putative, expressed -
18 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
19 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
20 Sobic.004G357300 uncharacterized ACR, COG1399 family protein, expressed -


Gene co-expression network
sample Sobic002G199000 Sobic002G199000 Sobic004G269600 Sobic004G269600 Sobic002G199000--Sobic004G269600 Sobic006G204600 Sobic006G204600 Sobic002G199000--Sobic006G204600 Sobic007G155600 Sobic007G155600 Sobic002G199000--Sobic007G155600 Sobic004G179200 Sobic004G179200 Sobic002G199000--Sobic004G179200 Sobic006G280800 Sobic006G280800 Sobic002G199000--Sobic006G280800 Sobic010G279100 Sobic010G279100 Sobic002G199000--Sobic010G279100 Sobic003G324700 Sobic003G324700 Sobic002G199000--Sobic003G324700 Sobic001G054100 Sobic001G054100 Sobic002G199000--Sobic001G054100 Sobic005G143500 Sobic005G143500 Sobic002G199000--Sobic005G143500 Sobic010G035200 Sobic010G035200 Sobic004G269600--Sobic010G035200 Sobic004G269600--Sobic006G280800 Sobic008G039600 Sobic008G039600 Sobic004G269600--Sobic008G039600 Sobic004G269600--Sobic002G199000 Sobic010G002000 Sobic010G002000 Sobic004G269600--Sobic010G002000 Sobic001G083100 Sobic001G083100 Sobic004G269600--Sobic001G083100 Sobic004G269600--Sobic005G143500 Sobic002G131700 Sobic002G131700 Sobic004G269600--Sobic002G131700 Sobic001G469933 Sobic001G469933 Sobic004G269600--Sobic001G469933 Sobic006G204600--Sobic002G199000 Sobic002G331100 Sobic002G331100 Sobic006G204600--Sobic002G331100 Sobic006G204600--Sobic010G279100 Sobic004G357300 Sobic004G357300 Sobic006G204600--Sobic004G357300 Sobic006G204600--Sobic010G002000 Sobic004G342500 Sobic004G342500 Sobic006G204600--Sobic004G342500 Sobic001G455500 Sobic001G455500 Sobic006G204600--Sobic001G455500 Sobic001G001300 Sobic001G001300 Sobic006G204600--Sobic001G001300 Sobic006G204600--Sobic001G054100 Sobic009G042200 Sobic009G042200 Sobic007G155600--Sobic009G042200 Sobic007G171800 Sobic007G171800 Sobic007G155600--Sobic007G171800 Sobic005G110481 Sobic005G110481 Sobic007G155600--Sobic005G110481 Sobic002G297400 Sobic002G297400 Sobic007G155600--Sobic002G297400 Sobic001G148200 Sobic001G148200 Sobic007G155600--Sobic001G148200 Sobic006G166000 Sobic006G166000 Sobic007G155600--Sobic006G166000 Sobic002G013700 Sobic002G013700 Sobic007G155600--Sobic002G013700 Sobic002G158800 Sobic002G158800 Sobic007G155600--Sobic002G158800 Sobic007G101300 Sobic007G101300 Sobic007G155600--Sobic007G101300 Sobic004G179200--Sobic002G131700 Sobic003G221700 Sobic003G221700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic006G111600 Sobic006G111600 Sobic004G179200--Sobic006G111600 Sobic009G234200 Sobic009G234200 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic003G330100 Sobic003G330100 Sobic004G179200--Sobic003G330100 Sobic006G280800--Sobic001G001300 Sobic001G500600 Sobic001G500600 Sobic006G280800--Sobic001G500600 Sobic003G094350 Sobic003G094350 Sobic006G280800--Sobic003G094350 Sobic004G333400 Sobic004G333400 Sobic006G280800--Sobic004G333400 Sobic003G070900 Sobic003G070900 Sobic006G280800--Sobic003G070900 Sobic003G372900 Sobic003G372900 Sobic006G280800--Sobic003G372900 Sobic002G133900 Sobic002G133900 Sobic006G280800--Sobic002G133900 Sobic008G006100 Sobic008G006100 Sobic006G280800--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic006G280800--Sobic001G134700 Sobic003G214800 Sobic003G214800 Sobic010G279100--Sobic003G214800 Sobic010G279100--Sobic002G199000 Sobic010G279100--Sobic001G455500 Sobic010G279100--Sobic006G204600 Sobic001G058600 Sobic001G058600 Sobic010G279100--Sobic001G058600 Sobic003G310800 Sobic003G310800 Sobic010G279100--Sobic003G310800 Sobic010G279100--Sobic003G439000 Sobic010G279100--Sobic004G342500 Sobic010G279100--Sobic004G357300 Sobic001G122400 Sobic001G122400 Sobic003G324700--Sobic001G122400 Sobic001G368500 Sobic001G368500 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic004G335800 Sobic004G335800 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G386300 Sobic003G386300 Sobic003G324700--Sobic003G386300 Sobic003G432500 Sobic003G432500 Sobic003G324700--Sobic003G432500 Sobic001G527100 Sobic001G527100 Sobic003G324700--Sobic001G527100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic005G110400 Sobic005G110400 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic005G143500--Sobic002G401800 Sobic006G106400 Sobic006G106400 Sobic005G143500--Sobic006G106400 Sobic002G272100 Sobic002G272100 Sobic005G143500--Sobic002G272100 Sobic008G073100 Sobic008G073100 Sobic005G143500--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic005G143500--Sobic001G495200 Sobic005G143500--Sobic003G324700
Octagon: transcription factors


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