Gene annotation
Transcriptome id Sobic.004G269600.1
Synonym Sb04g030740, OTP51
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat domain containing protein, putative, expressed
UniProt C5Y0D4
Pfam PF01535 PF03161
Panther DB PTHR24015 PTHR24015:SF899
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004519; endonuclease activity


Orthologs (automatic annotation)
TAIR AT2G15820 : endonucleases
RAP-DB (Rice) LOC_Os02g47360.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021690
Brachypodium KQK00904
Barley HORVU6Hr1G068550.1 , HORVU0Hr1G016700.1 , HORVU6Hr1G068490.5 , HORVU6Hr1G068490.4 , HORVU6Hr1G068490.1 , HORVU6Hr1G068490.3 , HORVU6Hr1G068490.2
Wheat TraesCS6A02G270100 , TraesCS6D02G244900 , TraesCS6B02G297400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
2 Sobic.006G280800 expressed protein -
3 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
4 Sobic.002G199000 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed K00592: [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
5 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
6 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
7 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
8 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
10 Sobic.003G324700 expressed protein -
11 Sobic.010G201600 tic21, putative, expressed -
12 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
13 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
14 Sobic.002G272100 expressed protein -
15 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
16 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
17 Sobic.004G179200 expressed protein -
18 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
19 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
20 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase


Gene co-expression network
sample Sobic004G269600 Sobic004G269600 Sobic010G035200 Sobic010G035200 Sobic004G269600--Sobic010G035200 Sobic006G280800 Sobic006G280800 Sobic004G269600--Sobic006G280800 Sobic008G039600 Sobic008G039600 Sobic004G269600--Sobic008G039600 Sobic002G199000 Sobic002G199000 Sobic004G269600--Sobic002G199000 Sobic010G002000 Sobic010G002000 Sobic004G269600--Sobic010G002000 Sobic001G083100 Sobic001G083100 Sobic004G269600--Sobic001G083100 Sobic005G143500 Sobic005G143500 Sobic004G269600--Sobic005G143500 Sobic002G131700 Sobic002G131700 Sobic004G269600--Sobic002G131700 Sobic001G469933 Sobic001G469933 Sobic004G269600--Sobic001G469933 Sobic010G035200--Sobic001G469933 Sobic003G324700 Sobic003G324700 Sobic010G035200--Sobic003G324700 Sobic007G171800 Sobic007G171800 Sobic010G035200--Sobic007G171800 Sobic010G035200--Sobic002G131700 Sobic010G035200--Sobic001G083100 Sobic001G122400 Sobic001G122400 Sobic010G035200--Sobic001G122400 Sobic010G035200--Sobic008G039600 Sobic009G131600 Sobic009G131600 Sobic010G035200--Sobic009G131600 Sobic004G164100 Sobic004G164100 Sobic010G035200--Sobic004G164100 Sobic001G001300 Sobic001G001300 Sobic006G280800--Sobic001G001300 Sobic001G500600 Sobic001G500600 Sobic006G280800--Sobic001G500600 Sobic003G094350 Sobic003G094350 Sobic006G280800--Sobic003G094350 Sobic004G333400 Sobic004G333400 Sobic006G280800--Sobic004G333400 Sobic003G070900 Sobic003G070900 Sobic006G280800--Sobic003G070900 Sobic003G372900 Sobic003G372900 Sobic006G280800--Sobic003G372900 Sobic002G133900 Sobic002G133900 Sobic006G280800--Sobic002G133900 Sobic008G006100 Sobic008G006100 Sobic006G280800--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic006G280800--Sobic001G134700 Sobic008G039600--Sobic005G143500 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic008G039600--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic008G039600--Sobic002G181000 Sobic002G199000--Sobic004G269600 Sobic006G204600 Sobic006G204600 Sobic002G199000--Sobic006G204600 Sobic007G155600 Sobic007G155600 Sobic002G199000--Sobic007G155600 Sobic004G179200 Sobic004G179200 Sobic002G199000--Sobic004G179200 Sobic002G199000--Sobic006G280800 Sobic010G279100 Sobic010G279100 Sobic002G199000--Sobic010G279100 Sobic002G199000--Sobic003G324700 Sobic001G054100 Sobic001G054100 Sobic002G199000--Sobic001G054100 Sobic002G199000--Sobic005G143500 Sobic010G002000--Sobic003G094350 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic010G002000--Sobic002G401800 Sobic009G148500 Sobic009G148500 Sobic010G002000--Sobic009G148500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic003G141100 Sobic003G141100 Sobic010G002000--Sobic003G141100 Sobic005G002900 Sobic005G002900 Sobic001G083100--Sobic005G002900 Sobic001G083100--Sobic009G148500 Sobic001G083100--Sobic008G039600 Sobic001G083100--Sobic001G469933 Sobic006G055800 Sobic006G055800 Sobic001G083100--Sobic006G055800 Sobic001G083100--Sobic002G272100 Sobic001G083100--Sobic003G372900 Sobic001G083100--Sobic001G054100 Sobic008G073100 Sobic008G073100 Sobic001G083100--Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic005G143500--Sobic002G272100 Sobic005G143500--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic005G143500--Sobic001G495200 Sobic005G143500--Sobic003G324700 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic002G131700--Sobic001G083100 Sobic001G469933--Sobic001G122400 Sobic001G469933--Sobic001G368500 Sobic001G469933--Sobic003G324700 Sobic003G077400 Sobic003G077400 Sobic001G469933--Sobic003G077400 Sobic001G469933--Sobic006G055800 Sobic003G432500 Sobic003G432500 Sobic001G469933--Sobic003G432500 Sobic004G335800 Sobic004G335800 Sobic001G469933--Sobic004G335800 Sobic001G469933--Sobic001G083100 Sobic001G469933--Sobic005G110400
Octagon: transcription factors


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