Gene annotation
Transcriptome id Sobic.001G410700.1
Synonym Sb01g038770
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5WNM0
Pfam PF12854 PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF643
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02830 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g17634.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052701
Brachypodium KQK22208
Barley HORVU4Hr1G057330.24 , HORVU4Hr1G057330.23 , HORVU4Hr1G057330.22 , HORVU4Hr1G057330.21 , HORVU4Hr1G057330.20 , HORVU4Hr1G057330.8 , HORVU4Hr1G057330.9 , HORVU4Hr1G057330.4 , HORVU4Hr1G057330.5 , HORVU4Hr1G057330.6 , HORVU4Hr1G057330.7 , HORVU4Hr1G057330.1 , HORVU4Hr1G057330.2 , HORVU4Hr1G057330.3 , HORVU4Hr1G057330.18 , HORVU4Hr1G057330.19 , HORVU4Hr1G057330.16 , HORVU4Hr1G057330.17 , HORVU4Hr1G057330.14 , HORVU4Hr1G057330.15 , HORVU4Hr1G057330.12 , HORVU4Hr1G057330.13 , HORVU4Hr1G057330.10 , HORVU4Hr1G057330.11
Wheat TraesCS4D02G199100 , TraesCS4D02G199100 , TraesCS4D02G199100 , TraesCS4D02G199100 , TraesCS4A02G105700 , TraesCS4A02G105700 , TraesCS4B02G198300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G331100 peptide chain release factor protein, putative, expressed K02836: peptide chain release factor 2
2 Sobic.002G199000 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed K00592: [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
3 Sobic.006G204600 pentatricopeptide, putative, expressed -
4 Sobic.001G536901 - -
5 Sobic.010G009466 - -
6 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
7 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
8 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.009G121000 expressed protein -
10 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
11 Sobic.006G280800 expressed protein -
12 Sobic.001G016100 pentatricopeptide, putative, expressed -
13 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
14 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
15 Sobic.003G290800 starch binding domain containing protein, putative, expressed -
16 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
17 Sobic.010G201600 tic21, putative, expressed -
18 Sobic.003G398800 expressed protein -
19 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
20 Sobic.003G318300 pentatricopeptide repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G410700 Sobic001G410700 Sobic002G331100 Sobic002G331100 Sobic001G410700--Sobic002G331100 Sobic002G199000 Sobic002G199000 Sobic001G410700--Sobic002G199000 Sobic006G204600 Sobic006G204600 Sobic001G410700--Sobic006G204600 Sobic001G536901 Sobic001G536901 Sobic001G410700--Sobic001G536901 Sobic010G009466 Sobic010G009466 Sobic001G410700--Sobic010G009466 Sobic004G342500 Sobic004G342500 Sobic001G410700--Sobic004G342500 Sobic001G001300 Sobic001G001300 Sobic001G410700--Sobic001G001300 Sobic003G160800 Sobic003G160800 Sobic001G410700--Sobic003G160800 Sobic009G121000 Sobic009G121000 Sobic001G410700--Sobic009G121000 Sobic002G331100--Sobic006G204600 Sobic002G331100--Sobic001G410700 Sobic001G016100 Sobic001G016100 Sobic002G331100--Sobic001G016100 Sobic002G331100--Sobic001G001300 Sobic010G002000 Sobic010G002000 Sobic002G331100--Sobic010G002000 Sobic002G331100--Sobic002G199000 Sobic002G331100--Sobic009G121000 Sobic006G280800 Sobic006G280800 Sobic002G331100--Sobic006G280800 Sobic001G016201 Sobic001G016201 Sobic002G331100--Sobic001G016201 Sobic004G269600 Sobic004G269600 Sobic002G199000--Sobic004G269600 Sobic002G199000--Sobic006G204600 Sobic007G155600 Sobic007G155600 Sobic002G199000--Sobic007G155600 Sobic004G179200 Sobic004G179200 Sobic002G199000--Sobic004G179200 Sobic002G199000--Sobic006G280800 Sobic010G279100 Sobic010G279100 Sobic002G199000--Sobic010G279100 Sobic003G324700 Sobic003G324700 Sobic002G199000--Sobic003G324700 Sobic001G054100 Sobic001G054100 Sobic002G199000--Sobic001G054100 Sobic005G143500 Sobic005G143500 Sobic002G199000--Sobic005G143500 Sobic006G204600--Sobic002G199000 Sobic006G204600--Sobic002G331100 Sobic006G204600--Sobic010G279100 Sobic004G357300 Sobic004G357300 Sobic006G204600--Sobic004G357300 Sobic006G204600--Sobic010G002000 Sobic006G204600--Sobic004G342500 Sobic001G455500 Sobic001G455500 Sobic006G204600--Sobic001G455500 Sobic006G204600--Sobic001G001300 Sobic006G204600--Sobic001G054100 Sobic001G252401 Sobic001G252401 Sobic001G536901--Sobic001G252401 Sobic001G536901--Sobic001G410700 Sobic009G137300 Sobic009G137300 Sobic001G536901--Sobic009G137300 Sobic003G403800 Sobic003G403800 Sobic001G536901--Sobic003G403800 Sobic010G201600 Sobic010G201600 Sobic001G536901--Sobic010G201600 Sobic001G536901--Sobic004G342500 Sobic003G318300 Sobic003G318300 Sobic001G536901--Sobic003G318300 Sobic001G093500 Sobic001G093500 Sobic001G536901--Sobic001G093500 Sobic005G101300 Sobic005G101300 Sobic001G536901--Sobic005G101300 Sobic010G009466--Sobic003G160800 Sobic003G141100 Sobic003G141100 Sobic010G009466--Sobic003G141100 Sobic006G210400 Sobic006G210400 Sobic010G009466--Sobic006G210400 Sobic004G328400 Sobic004G328400 Sobic010G009466--Sobic004G328400 Sobic010G009466--Sobic001G001300 Sobic009G056700 Sobic009G056700 Sobic010G009466--Sobic009G056700 Sobic003G372900 Sobic003G372900 Sobic010G009466--Sobic003G372900 Sobic010G009466--Sobic009G121000 Sobic004G179400 Sobic004G179400 Sobic010G009466--Sobic004G179400 Sobic004G342500--Sobic006G204600 Sobic004G342500--Sobic010G279100 Sobic004G342500--Sobic002G199000 Sobic004G342500--Sobic001G410700 Sobic004G235100 Sobic004G235100 Sobic004G342500--Sobic004G235100 Sobic003G214800 Sobic003G214800 Sobic004G342500--Sobic003G214800 Sobic004G342500--Sobic001G455500 Sobic006G049200 Sobic006G049200 Sobic004G342500--Sobic006G049200 Sobic006G122500 Sobic006G122500 Sobic004G342500--Sobic006G122500 Sobic001G001300--Sobic006G280800 Sobic003G085100 Sobic003G085100 Sobic001G001300--Sobic003G085100 Sobic001G001300--Sobic003G160800 Sobic002G133900 Sobic002G133900 Sobic001G001300--Sobic002G133900 Sobic009G148500 Sobic009G148500 Sobic001G001300--Sobic009G148500 Sobic005G111550 Sobic005G111550 Sobic001G001300--Sobic005G111550 Sobic003G287900 Sobic003G287900 Sobic001G001300--Sobic003G287900 Sobic001G500600 Sobic001G500600 Sobic001G001300--Sobic001G500600 Sobic001G134700 Sobic001G134700 Sobic001G001300--Sobic001G134700 Sobic004G336200 Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic010G043800 Sobic010G043800 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700
Octagon: transcription factors


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