Gene annotation
Transcriptome id Sobic.010G005200.1
Synonym Sb10g000690
Functional annotation expressed protein
UniProt C5Z266
Pfam PF05684
Panther DB PTHR34289 PTHR34289:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24000 : Protein of unknown function (DUF819)
RAP-DB (Rice) LOC_Os06g01790.1 : expressed protein
MaizeGDB (Corn) Zm00025a050306 , Zm00025a053257
Brachypodium KQK20039
Barley HORVU7Hr1G002050.2 , HORVU7Hr1G002050.4 , HORVU7Hr1G002050.5 , HORVU7Hr1G002050.1 , HORVU7Hr1G002050.3
Wheat TraesCS4A02G473200 , TraesCS4A02G473600 , TraesCS7A02G018400 , TraesCS7D02G015700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.001G372600 DVR, putative, expressed K19073: divinyl chlorophyllide a 8-vinyl-reductase
3 Sobic.004G235100 PPR repeat domain containing protein, putative, expressed -
4 Sobic.010G116500 expressed protein -
5 Sobic.008G032701 - -
6 Sobic.003G099400 cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
7 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
8 Sobic.008G142400 cycloartenol synthase, putative, expressed -
9 Sobic.006G013800 CBS domain containing membrane protein, putative, expressed -
10 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
11 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
12 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
13 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
14 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.002G227700 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
17 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
18 Sobic.003G150600 pectinacetylesterase domain containing protein, expressed -
19 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
20 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31


Gene co-expression network
sample Sobic010G005200 Sobic010G005200 Sobic002G134300 Sobic002G134300 Sobic010G005200--Sobic002G134300 Sobic001G372600 Sobic001G372600 Sobic010G005200--Sobic001G372600 Sobic004G235100 Sobic004G235100 Sobic010G005200--Sobic004G235100 Sobic010G116500 Sobic010G116500 Sobic010G005200--Sobic010G116500 Sobic008G032701 Sobic008G032701 Sobic010G005200--Sobic008G032701 Sobic003G099400 Sobic003G099400 Sobic010G005200--Sobic003G099400 Sobic010G022100 Sobic010G022100 Sobic010G005200--Sobic010G022100 Sobic008G142400 Sobic008G142400 Sobic010G005200--Sobic008G142400 Sobic006G013800 Sobic006G013800 Sobic010G005200--Sobic006G013800 Sobic002G176300 Sobic002G176300 Sobic002G134300--Sobic002G176300 Sobic002G134300--Sobic010G005200 Sobic001G021601 Sobic001G021601 Sobic002G134300--Sobic001G021601 Sobic002G134300--Sobic008G142400 Sobic002G142000 Sobic002G142000 Sobic002G134300--Sobic002G142000 Sobic006G280400 Sobic006G280400 Sobic002G134300--Sobic006G280400 Sobic008G086700 Sobic008G086700 Sobic002G134300--Sobic008G086700 Sobic002G311700 Sobic002G311700 Sobic002G134300--Sobic002G311700 Sobic006G207700 Sobic006G207700 Sobic002G134300--Sobic006G207700 Sobic002G341500 Sobic002G341500 Sobic001G372600--Sobic002G341500 Sobic001G017000 Sobic001G017000 Sobic001G372600--Sobic001G017000 Sobic001G484300 Sobic001G484300 Sobic001G372600--Sobic001G484300 Sobic003G214800 Sobic003G214800 Sobic001G372600--Sobic003G214800 Sobic008G112300 Sobic008G112300 Sobic001G372600--Sobic008G112300 Sobic003G058600 Sobic003G058600 Sobic001G372600--Sobic003G058600 Sobic004G076000 Sobic004G076000 Sobic001G372600--Sobic004G076000 Sobic003G328200 Sobic003G328200 Sobic001G372600--Sobic003G328200 Sobic010G255600 Sobic010G255600 Sobic001G372600--Sobic010G255600 Sobic007G018900 Sobic007G018900 Sobic004G235100--Sobic007G018900 Sobic009G191900 Sobic009G191900 Sobic004G235100--Sobic009G191900 Sobic006G049200 Sobic006G049200 Sobic004G235100--Sobic006G049200 Sobic004G235100--Sobic008G142400 Sobic001G531800 Sobic001G531800 Sobic004G235100--Sobic001G531800 Sobic004G342500 Sobic004G342500 Sobic004G235100--Sobic004G342500 Sobic005G110433 Sobic005G110433 Sobic004G235100--Sobic005G110433 Sobic007G122400 Sobic007G122400 Sobic004G235100--Sobic007G122400 Sobic009G210800 Sobic009G210800 Sobic004G235100--Sobic009G210800 Sobic010G116500--Sobic003G328200 Sobic001G240000 Sobic001G240000 Sobic010G116500--Sobic001G240000 Sobic010G116500--Sobic010G022100 Sobic001G527100 Sobic001G527100 Sobic010G116500--Sobic001G527100 Sobic003G014100 Sobic003G014100 Sobic010G116500--Sobic003G014100 Sobic006G248200 Sobic006G248200 Sobic010G116500--Sobic006G248200 Sobic003G386300 Sobic003G386300 Sobic010G116500--Sobic003G386300 Sobic002G198600 Sobic002G198600 Sobic010G116500--Sobic002G198600 Sobic001G411300 Sobic001G411300 Sobic010G116500--Sobic001G411300 Sobic007G069500 Sobic007G069500 Sobic008G032701--Sobic007G069500 Sobic002G207900 Sobic002G207900 Sobic008G032701--Sobic002G207900 Sobic007G181000 Sobic007G181000 Sobic008G032701--Sobic007G181000 Sobic001G255300 Sobic001G255300 Sobic008G032701--Sobic001G255300 Sobic007G170800 Sobic007G170800 Sobic008G032701--Sobic007G170800 Sobic007G146350 Sobic007G146350 Sobic008G032701--Sobic007G146350 Sobic001G363700 Sobic001G363700 Sobic008G032701--Sobic001G363700 Sobic003G114200 Sobic003G114200 Sobic008G032701--Sobic003G114200 Sobic003G150600 Sobic003G150600 Sobic008G032701--Sobic003G150600 Sobic001G382100 Sobic001G382100 Sobic003G099400--Sobic001G382100 Sobic007G116950 Sobic007G116950 Sobic003G099400--Sobic007G116950 Sobic004G238500 Sobic004G238500 Sobic003G099400--Sobic004G238500 Sobic008G051000 Sobic008G051000 Sobic003G099400--Sobic008G051000 Sobic007G029300 Sobic007G029300 Sobic003G099400--Sobic007G029300 Sobic003G099400--Sobic010G255600 Sobic009G091850 Sobic009G091850 Sobic003G099400--Sobic009G091850 Sobic006G264201 Sobic006G264201 Sobic003G099400--Sobic006G264201 Sobic001G203000 Sobic001G203000 Sobic003G099400--Sobic001G203000 Sobic009G091800 Sobic009G091800 Sobic010G022100--Sobic009G091800 Sobic004G234200 Sobic004G234200 Sobic010G022100--Sobic004G234200 Sobic002G288300 Sobic002G288300 Sobic010G022100--Sobic002G288300 Sobic010G011800 Sobic010G011800 Sobic010G022100--Sobic010G011800 Sobic002G297300 Sobic002G297300 Sobic010G022100--Sobic002G297300 Sobic010G000500 Sobic010G000500 Sobic010G022100--Sobic010G000500 Sobic010G022100--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic010G022100--Sobic002G414400 Sobic010G022100--Sobic004G238500 Sobic008G142400--Sobic002G311700 Sobic002G052600 Sobic002G052600 Sobic008G142400--Sobic002G052600 Sobic008G142400--Sobic001G531800 Sobic008G142400--Sobic004G235100 Sobic008G142400--Sobic007G122400 Sobic006G253900 Sobic006G253900 Sobic008G142400--Sobic006G253900 Sobic005G029900 Sobic005G029900 Sobic008G142400--Sobic005G029900 Sobic008G142400--Sobic003G214800 Sobic009G196001 Sobic009G196001 Sobic008G142400--Sobic009G196001 Sobic005G194100 Sobic005G194100 Sobic006G013800--Sobic005G194100 Sobic001G221300 Sobic001G221300 Sobic006G013800--Sobic001G221300 Sobic008G172700 Sobic008G172700 Sobic006G013800--Sobic008G172700 Sobic004G251500 Sobic004G251500 Sobic006G013800--Sobic004G251500 Sobic002G267900 Sobic002G267900 Sobic006G013800--Sobic002G267900 Sobic004G239100 Sobic004G239100 Sobic006G013800--Sobic004G239100 Sobic004G020300 Sobic004G020300 Sobic006G013800--Sobic004G020300 Sobic001G023700 Sobic001G023700 Sobic006G013800--Sobic001G023700 Sobic006G013800--Sobic009G091850
Octagon: transcription factors


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