Gene annotation
Transcriptome id Sobic.001G513000.1
Synonym Sb01g047870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt Q1KSA8
Pfam PF14432 PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF103
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35130 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g04390.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a000500
Brachypodium KQK23768
Barley HORVU5Hr1G007030.3 , HORVU5Hr1G007030.2 , HORVU5Hr1G007030.1 , HORVU5Hr1G070090.3 , HORVU5Hr1G070090.2 , HORVU5Hr1G070090.1 , HORVU4Hr1G080660.2 , HORVU4Hr1G080660.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G513000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G025400 phosphatidate cytidylyltransferase, putative, expressed -
2 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G253400 tic20 protein-related, putative, expressed -
5 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
6 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
7 Sobic.003G310800 expressed protein -
8 Sobic.002G331800 PPR repeat containing protein, expressed -
9 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
10 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
11 Sobic.001G118400 expressed protein -
12 Sobic.003G334100 zinc finger family protein, putative, expressed -
13 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
14 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
15 Sobic.004G326500 PAP fibrillin family domain containing protein, expressed -
16 Sobic.001G058600 BT1 family protein, putative, expressed -
17 Sobic.003G275200 methyltransferase domain containing protein, expressed -
18 Sobic.006G204600 pentatricopeptide, putative, expressed -
19 Sobic.004G055000 peptidase, cysteine peptidase active site, putative, expressed -
20 Sobic.006G125000 expressed protein -


Gene co-expression network
sample Sobic001G513000 Sobic001G513000 Sobic004G025400 Sobic004G025400 Sobic001G513000--Sobic004G025400 Sobic001G006000 Sobic001G006000 Sobic001G513000--Sobic001G006000 Sobic002G345200 Sobic002G345200 Sobic001G513000--Sobic002G345200 Sobic004G253400 Sobic004G253400 Sobic001G513000--Sobic004G253400 Sobic004G250200 Sobic004G250200 Sobic001G513000--Sobic004G250200 Sobic003G245800 Sobic003G245800 Sobic001G513000--Sobic003G245800 Sobic003G310800 Sobic003G310800 Sobic001G513000--Sobic003G310800 Sobic002G331800 Sobic002G331800 Sobic001G513000--Sobic002G331800 Sobic010G056300 Sobic010G056300 Sobic001G513000--Sobic010G056300 Sobic004G025400--Sobic001G006000 Sobic009G028400 Sobic009G028400 Sobic004G025400--Sobic009G028400 Sobic005G028900 Sobic005G028900 Sobic004G025400--Sobic005G028900 Sobic001G455500 Sobic001G455500 Sobic004G025400--Sobic001G455500 Sobic001G283700 Sobic001G283700 Sobic004G025400--Sobic001G283700 Sobic003G221700 Sobic003G221700 Sobic004G025400--Sobic003G221700 Sobic003G439600 Sobic003G439600 Sobic004G025400--Sobic003G439600 Sobic004G025400--Sobic004G253400 Sobic004G179200 Sobic004G179200 Sobic004G025400--Sobic004G179200 Sobic010G076800 Sobic010G076800 Sobic001G006000--Sobic010G076800 Sobic001G006000--Sobic009G028400 Sobic001G006000--Sobic004G253400 Sobic008G063200 Sobic008G063200 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic003G253300 Sobic003G253300 Sobic001G006000--Sobic003G253300 Sobic001G006000--Sobic003G245800 Sobic002G345200--Sobic003G245800 Sobic006G197700 Sobic006G197700 Sobic002G345200--Sobic006G197700 Sobic003G330100 Sobic003G330100 Sobic002G345200--Sobic003G330100 Sobic002G345200--Sobic004G250200 Sobic002G345200--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic002G345200--Sobic008G072300 Sobic006G111600 Sobic006G111600 Sobic002G345200--Sobic006G111600 Sobic002G250100 Sobic002G250100 Sobic002G345200--Sobic002G250100 Sobic010G028000 Sobic010G028000 Sobic002G345200--Sobic010G028000 Sobic004G253400--Sobic001G006000 Sobic001G175700 Sobic001G175700 Sobic004G253400--Sobic001G175700 Sobic006G125000 Sobic006G125000 Sobic004G253400--Sobic006G125000 Sobic003G342200 Sobic003G342200 Sobic004G253400--Sobic003G342200 Sobic004G253400--Sobic003G253300 Sobic003G378600 Sobic003G378600 Sobic004G253400--Sobic003G378600 Sobic004G253400--Sobic004G179200 Sobic004G012900 Sobic004G012900 Sobic004G253400--Sobic004G012900 Sobic006G110900 Sobic006G110900 Sobic004G253400--Sobic006G110900 Sobic004G250200--Sobic003G330100 Sobic010G183400 Sobic010G183400 Sobic004G250200--Sobic010G183400 Sobic004G250200--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic004G250200--Sobic009G234200 Sobic004G250200--Sobic006G111600 Sobic004G250200--Sobic002G345200 Sobic004G250200--Sobic005G028900 Sobic004G250200--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic004G250200--Sobic003G444500 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic010G279100 Sobic010G279100 Sobic003G310800--Sobic010G279100 Sobic003G214800 Sobic003G214800 Sobic003G310800--Sobic003G214800 Sobic001G186200 Sobic001G186200 Sobic003G310800--Sobic001G186200 Sobic003G310800--Sobic001G006000 Sobic003G310800--Sobic001G455500 Sobic002G038300 Sobic002G038300 Sobic003G310800--Sobic002G038300 Sobic003G310800--Sobic010G028000 Sobic003G310800--Sobic003G245800 Sobic001G388400 Sobic001G388400 Sobic003G310800--Sobic001G388400 Sobic002G331800--Sobic010G076800 Sobic006G214700 Sobic006G214700 Sobic002G331800--Sobic006G214700 Sobic002G331800--Sobic003G439600 Sobic004G333400 Sobic004G333400 Sobic002G331800--Sobic004G333400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic001G450600 Sobic001G450600 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic002G331800--Sobic003G245800 Sobic001G535700 Sobic001G535700 Sobic010G056300--Sobic001G535700 Sobic010G056300--Sobic001G118400 Sobic006G155500 Sobic006G155500 Sobic010G056300--Sobic006G155500 Sobic010G056300--Sobic002G331800 Sobic010G056300--Sobic010G183400 Sobic004G055000 Sobic004G055000 Sobic010G056300--Sobic004G055000 Sobic010G056300--Sobic001G175700 Sobic010G056300--Sobic003G253300 Sobic006G050400 Sobic006G050400 Sobic010G056300--Sobic006G050400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.