Gene annotation
Transcriptome id Sobic.006G265300.2,Sobic.006G265300.1
Synonym Sb06g032780
Functional annotation endonuclease, putative, expressed
UniProt A0A1B6PP39 , A0A1B6PP29
Pfam PF07460
Panther DB PTHR34199 PTHR34199:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G53800 : -
RAP-DB (Rice) LOC_Os10g12354.1,LOC_Os10g12354.2 : endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a009314
Brachypodium KQJ96424 , KQJ96423 , PNT67233
Barley HORVU0Hr1G038290.1
Wheat TraesCS1B02G153800 , TraesCS1A02G130900 , TraesCS1D02G136500
Populus -


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cDNA sequences
Sobic.006G265300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G016100 pentatricopeptide, putative, expressed -
2 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
3 Sobic.006G204600 pentatricopeptide, putative, expressed -
4 Sobic.010G279100 expressed protein -
5 Sobic.004G157600 expressed protein -
6 Sobic.006G270200 smr domain containing protein, expressed K07456: DNA mismatch repair protein MutS2
7 Sobic.004G190900 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.001G028100 - -
9 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
10 Sobic.002G199000 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed K00592: [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
11 Sobic.008G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase, putative, expressed -
12 Sobic.005G155900 weakly similar to Myb factor(PubMedID : 29862293)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.003G161100 powdery mildew resistance protein PM3A, putative, expressed -
14 Sobic.004G255500 SET domain-containing protein, putative, expressed -
15 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.004G357300 uncharacterized ACR, COG1399 family protein, expressed -
17 Sobic.003G290800 starch binding domain containing protein, putative, expressed -
18 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
19 Sobic.001G037500 expressed protein -
20 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic006G265300 Sobic006G265300 Sobic001G016100 Sobic001G016100 Sobic006G265300--Sobic001G016100 Sobic010G002000 Sobic010G002000 Sobic006G265300--Sobic010G002000 Sobic006G204600 Sobic006G204600 Sobic006G265300--Sobic006G204600 Sobic010G279100 Sobic010G279100 Sobic006G265300--Sobic010G279100 Sobic004G157600 Sobic004G157600 Sobic006G265300--Sobic004G157600 Sobic006G270200 Sobic006G270200 Sobic006G265300--Sobic006G270200 Sobic004G190900 Sobic004G190900 Sobic006G265300--Sobic004G190900 Sobic001G028100 Sobic001G028100 Sobic006G265300--Sobic001G028100 Sobic001G054100 Sobic001G054100 Sobic006G265300--Sobic001G054100 Sobic009G121000 Sobic009G121000 Sobic001G016100--Sobic009G121000 Sobic002G028400 Sobic002G028400 Sobic001G016100--Sobic002G028400 Sobic001G016100--Sobic001G054100 Sobic003G094350 Sobic003G094350 Sobic001G016100--Sobic003G094350 Sobic001G016100--Sobic010G002000 Sobic002G133900 Sobic002G133900 Sobic001G016100--Sobic002G133900 Sobic010G043800 Sobic010G043800 Sobic001G016100--Sobic010G043800 Sobic003G372900 Sobic003G372900 Sobic001G016100--Sobic003G372900 Sobic001G016100--Sobic001G028100 Sobic010G002000--Sobic003G094350 Sobic008G039600 Sobic008G039600 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic001G500600 Sobic001G500600 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic009G148500 Sobic009G148500 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic003G141100 Sobic003G141100 Sobic010G002000--Sobic003G141100 Sobic002G199000 Sobic002G199000 Sobic006G204600--Sobic002G199000 Sobic002G331100 Sobic002G331100 Sobic006G204600--Sobic002G331100 Sobic006G204600--Sobic010G279100 Sobic004G357300 Sobic004G357300 Sobic006G204600--Sobic004G357300 Sobic006G204600--Sobic010G002000 Sobic004G342500 Sobic004G342500 Sobic006G204600--Sobic004G342500 Sobic001G455500 Sobic001G455500 Sobic006G204600--Sobic001G455500 Sobic001G001300 Sobic001G001300 Sobic006G204600--Sobic001G001300 Sobic006G204600--Sobic001G054100 Sobic003G214800 Sobic003G214800 Sobic010G279100--Sobic003G214800 Sobic010G279100--Sobic002G199000 Sobic010G279100--Sobic001G455500 Sobic010G279100--Sobic006G204600 Sobic001G058600 Sobic001G058600 Sobic010G279100--Sobic001G058600 Sobic003G310800 Sobic003G310800 Sobic010G279100--Sobic003G310800 Sobic003G439000 Sobic003G439000 Sobic010G279100--Sobic003G439000 Sobic010G279100--Sobic004G342500 Sobic010G279100--Sobic004G357300 Sobic004G225600 Sobic004G225600 Sobic004G157600--Sobic004G225600 Sobic002G296100 Sobic002G296100 Sobic004G157600--Sobic002G296100 Sobic004G157600--Sobic004G190900 Sobic003G434700 Sobic003G434700 Sobic004G157600--Sobic003G434700 Sobic002G042500 Sobic002G042500 Sobic004G157600--Sobic002G042500 Sobic003G045300 Sobic003G045300 Sobic004G157600--Sobic003G045300 Sobic009G170000 Sobic009G170000 Sobic004G157600--Sobic009G170000 Sobic001G261573 Sobic001G261573 Sobic004G157600--Sobic001G261573 Sobic009G129100 Sobic009G129100 Sobic004G157600--Sobic009G129100 Sobic006G270200--Sobic001G028100 Sobic003G352500 Sobic003G352500 Sobic006G270200--Sobic003G352500 Sobic006G270200--Sobic001G054100 Sobic006G270200--Sobic008G039600 Sobic002G181000 Sobic002G181000 Sobic006G270200--Sobic002G181000 Sobic006G270200--Sobic010G002000 Sobic001G220000 Sobic001G220000 Sobic006G270200--Sobic001G220000 Sobic006G270200--Sobic003G094350 Sobic003G232700 Sobic003G232700 Sobic006G270200--Sobic003G232700 Sobic004G190900--Sobic003G434700 Sobic003G162800 Sobic003G162800 Sobic004G190900--Sobic003G162800 Sobic004G206200 Sobic004G206200 Sobic004G190900--Sobic004G206200 Sobic007G069400 Sobic007G069400 Sobic004G190900--Sobic007G069400 Sobic004G190900--Sobic004G225600 Sobic001G022500 Sobic001G022500 Sobic004G190900--Sobic001G022500 Sobic006G110200 Sobic006G110200 Sobic004G190900--Sobic006G110200 Sobic003G254000 Sobic003G254000 Sobic004G190900--Sobic003G254000 Sobic004G035000 Sobic004G035000 Sobic004G190900--Sobic004G035000 Sobic001G028100--Sobic001G054100 Sobic001G028100--Sobic006G270200 Sobic001G028100--Sobic003G352500 Sobic001G028100--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic001G028100--Sobic007G185700 Sobic001G028100--Sobic010G002000 Sobic001G028100--Sobic008G039600 Sobic001G028100--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic001G028100--Sobic002G043600 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400
Octagon: transcription factors


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