Gene annotation
Transcriptome id Sobic.001G088700.3,Sobic.001G088700.2,Sobic.001G088700.4
Synonym Sb01g008000
Functional annotation DCL, chloroplast precursor, putative, expressed
UniProt A0A1Z5S4Z6 , A0A1Z5S591 , A0A1Z5S4Y1
Pfam PF11523
Panther DB PTHR33415 PTHR33415:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46630 : Protein of unknown function (DUF3223)
RAP-DB (Rice) LOC_Os08g21700.1 : DCL, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a008162
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G127800 - K07052: uncharacterized protein
2 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
3 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
4 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
5 Sobic.009G187100 expressed protein -
6 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
7 Sobic.009G098100 T-complex protein, putative, expressed -
8 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
9 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
10 Sobic.002G306201 - -
11 Sobic.002G251400 expressed protein -
12 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
14 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.005G110481 - -
16 Sobic.003G383500 rhodanese-like, putative, expressed -
17 Sobic.008G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase, putative, expressed -
18 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
20 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic001G088700 Sobic001G088700 Sobic002G127800 Sobic002G127800 Sobic001G088700--Sobic002G127800 Sobic003G295800 Sobic003G295800 Sobic001G088700--Sobic003G295800 Sobic007G171800 Sobic007G171800 Sobic001G088700--Sobic007G171800 Sobic001G017000 Sobic001G017000 Sobic001G088700--Sobic001G017000 Sobic009G187100 Sobic009G187100 Sobic001G088700--Sobic009G187100 Sobic009G001500 Sobic009G001500 Sobic001G088700--Sobic009G001500 Sobic009G098100 Sobic009G098100 Sobic001G088700--Sobic009G098100 Sobic004G044000 Sobic004G044000 Sobic001G088700--Sobic004G044000 Sobic007G013400 Sobic007G013400 Sobic001G088700--Sobic007G013400 Sobic002G127800--Sobic009G001500 Sobic002G127800--Sobic007G013400 Sobic002G251400 Sobic002G251400 Sobic002G127800--Sobic002G251400 Sobic002G127800--Sobic003G295800 Sobic003G383500 Sobic003G383500 Sobic002G127800--Sobic003G383500 Sobic001G040000 Sobic001G040000 Sobic002G127800--Sobic001G040000 Sobic005G110481 Sobic005G110481 Sobic002G127800--Sobic005G110481 Sobic001G391400 Sobic001G391400 Sobic002G127800--Sobic001G391400 Sobic001G527100 Sobic001G527100 Sobic002G127800--Sobic001G527100 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic001G017000--Sobic003G295800 Sobic004G076000 Sobic004G076000 Sobic001G017000--Sobic004G076000 Sobic001G017000--Sobic004G317900 Sobic001G323801 Sobic001G323801 Sobic001G017000--Sobic001G323801 Sobic001G017000--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic001G017000--Sobic006G280050 Sobic003G246400 Sobic003G246400 Sobic001G017000--Sobic003G246400 Sobic003G328200 Sobic003G328200 Sobic001G017000--Sobic003G328200 Sobic004G191200 Sobic004G191200 Sobic001G017000--Sobic004G191200 Sobic009G187100--Sobic007G171800 Sobic001G240000 Sobic001G240000 Sobic009G187100--Sobic001G240000 Sobic009G187100--Sobic001G040000 Sobic009G187100--Sobic003G328200 Sobic010G219500 Sobic010G219500 Sobic009G187100--Sobic010G219500 Sobic003G386300 Sobic003G386300 Sobic009G187100--Sobic003G386300 Sobic009G187100--Sobic002G251400 Sobic009G187100--Sobic003G295800 Sobic004G335800 Sobic004G335800 Sobic009G187100--Sobic004G335800 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic009G001500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic001G069500 Sobic001G069500 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic001G188600 Sobic001G188600 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100 Sobic004G044000--Sobic001G027600 Sobic004G044000--Sobic001G383900 Sobic004G044000--Sobic006G280050 Sobic004G044000--Sobic009G001500 Sobic003G030900 Sobic003G030900 Sobic004G044000--Sobic003G030900 Sobic004G044000--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic004G044000--Sobic002G242600 Sobic001G076500 Sobic001G076500 Sobic004G044000--Sobic001G076500 Sobic004G044000--Sobic007G034500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100
Octagon: transcription factors


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