Gene annotation
Transcriptome id Sobic.001G313400.1,Sobic.001G313400.2
Synonym
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1Z5S8J1 , A0A1B6QM61
Pfam PF13245 PF13087
Panther DB PTHR10887 PTHR10887:SF353
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65810 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os10g39230.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a003172
Brachypodium KQJ97601 , PNT67782 , PNT67783
Barley HORVU1Hr1G051970.14 , HORVU1Hr1G051970.1 , HORVU1Hr1G051970.3 , HORVU1Hr1G051970.2 , HORVU1Hr1G051970.9 , HORVU1Hr1G051970.19 , HORVU1Hr1G051970.18 , HORVU1Hr1G051970.5 , HORVU1Hr1G051970.4 , HORVU1Hr1G051970.7 , HORVU1Hr1G051970.6 , HORVU1Hr1G051970.16 , HORVU1Hr1G051970.11 , HORVU1Hr1G051970.13 , HORVU1Hr1G051970.12 , HORVU1Hr1G051970.17 , HORVU1Hr1G051970.10 , HORVU1Hr1G051970.20 , HORVU1Hr1G051970.21 , HORVU1Hr1G051970.22 , HORVU1Hr1G051970.23 , HORVU1Hr1G051970.24 , HORVU1Hr1G051970.25 , HORVU1Hr1G051970.26 , HORVU1Hr1G051970.27 , HORVU1Hr1G051970.28
Wheat TraesCS1A02G200900 , TraesCS1A02G200900 , TraesCS1A02G200900 , TraesCS1B02G215300 , TraesCS1D02G204300 , TraesCS1D02G204300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
2 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
3 Sobic.006G224800 expressed protein -
4 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
5 Sobic.004G357100 expressed protein -
6 Sobic.006G128100 lipase, putative, expressed -
7 Sobic.001G308400 expressed protein -
8 Sobic.009G249700 expressed protein -
9 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
10 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
11 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
12 Sobic.002G264600 GRAM domain containing protein, expressed -
13 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.006G203300 GPR89A, putative, expressed -
15 Sobic.009G260650 - -
16 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
17 Sobic.003G398400 expressed protein -
18 Sobic.003G444800 expressed protein -
19 Sobic.003G043000 expressed protein -
20 Sobic.001G490900 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic001G313400 Sobic001G313400 Sobic003G394200 Sobic003G394200 Sobic001G313400--Sobic003G394200 Sobic003G189600 Sobic003G189600 Sobic001G313400--Sobic003G189600 Sobic006G224800 Sobic006G224800 Sobic001G313400--Sobic006G224800 Sobic009G166600 Sobic009G166600 Sobic001G313400--Sobic009G166600 Sobic004G357100 Sobic004G357100 Sobic001G313400--Sobic004G357100 Sobic006G128100 Sobic006G128100 Sobic001G313400--Sobic006G128100 Sobic001G308400 Sobic001G308400 Sobic001G313400--Sobic001G308400 Sobic009G249700 Sobic009G249700 Sobic001G313400--Sobic009G249700 Sobic007G218000 Sobic007G218000 Sobic001G313400--Sobic007G218000 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic005G110499 Sobic005G110499 Sobic003G189600--Sobic005G110499 Sobic010G185400 Sobic010G185400 Sobic003G189600--Sobic010G185400 Sobic003G189600--Sobic007G218000 Sobic006G077200 Sobic006G077200 Sobic003G189600--Sobic006G077200 Sobic003G189600--Sobic003G394200 Sobic003G189600--Sobic006G224800 Sobic003G189600--Sobic009G249700 Sobic003G189600--Sobic001G308400 Sobic004G322400 Sobic004G322400 Sobic003G189600--Sobic004G322400 Sobic003G062300 Sobic003G062300 Sobic006G224800--Sobic003G062300 Sobic003G416700 Sobic003G416700 Sobic006G224800--Sobic003G416700 Sobic006G166200 Sobic006G166200 Sobic006G224800--Sobic006G166200 Sobic006G224800--Sobic003G189600 Sobic004G053500 Sobic004G053500 Sobic006G224800--Sobic004G053500 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic002G295500 Sobic002G295500 Sobic006G224800--Sobic002G295500 Sobic002G430300 Sobic002G430300 Sobic006G224800--Sobic002G430300 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic005G114800 Sobic005G114800 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G166600--Sobic009G249700 Sobic008G021000 Sobic008G021000 Sobic009G166600--Sobic008G021000 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic009G166600--Sobic006G128100 SobicK028600 SobicK028600 Sobic004G357100--SobicK028600 Sobic003G444800 Sobic003G444800 Sobic004G357100--Sobic003G444800 Sobic002G063900 Sobic002G063900 Sobic004G357100--Sobic002G063900 Sobic003G152400 Sobic003G152400 Sobic004G357100--Sobic003G152400 Sobic003G043000 Sobic003G043000 Sobic004G357100--Sobic003G043000 Sobic004G265500 Sobic004G265500 Sobic004G357100--Sobic004G265500 Sobic004G357100--Sobic001G308400 Sobic007G042400 Sobic007G042400 Sobic004G357100--Sobic007G042400 Sobic006G234700 Sobic006G234700 Sobic004G357100--Sobic006G234700 Sobic006G128100--Sobic003G394200 Sobic006G128100--Sobic001G308400 Sobic002G355800 Sobic002G355800 Sobic006G128100--Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic006G128100--Sobic010G169900 Sobic002G079000 Sobic002G079000 Sobic006G128100--Sobic002G079000 Sobic010G213500 Sobic010G213500 Sobic006G128100--Sobic010G213500 Sobic006G128100--Sobic003G189600 Sobic003G346400 Sobic003G346400 Sobic006G128100--Sobic003G346400 Sobic006G128100--Sobic006G210700 Sobic001G308400--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G308400--Sobic002G227500 Sobic001G308400--SobicK028600 Sobic001G308400--Sobic003G043000 Sobic001G308400--Sobic010G169900 Sobic001G308400--Sobic006G128100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic001G308400--Sobic003G394200 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic009G249700--Sobic003G189600 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic009G249700--Sobic010G169900 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.