Gene annotation
Transcriptome id Sobic.002G264600.1
Synonym Sb02g029920
Functional annotation GRAM domain containing protein, expressed
UniProt C5X5F0
Pfam PF00168 PF02893 PF16016
Panther DB PTHR23319 PTHR23319:SF17
NCBI CDD KOG1032; Uncharacterized conserved protein, contains GRAM domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G59660 : C2 domain-containing protein / GRAM domain-containing protein
RAP-DB (Rice) LOC_Os09g34130.1 : GRAM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014351 , Zm00025a047676
Brachypodium PNT64975 , KQJ91058
Barley HORVU6Hr1G085120.16 , HORVU6Hr1G085120.17 , HORVU6Hr1G085120.14 , HORVU6Hr1G085120.15 , HORVU6Hr1G085120.12 , HORVU6Hr1G085120.13 , HORVU6Hr1G085120.10 , HORVU6Hr1G085120.11 , HORVU6Hr1G085120.18 , HORVU6Hr1G085120.19 , HORVU6Hr1G085120.63 , HORVU6Hr1G085120.62 , HORVU6Hr1G085120.61 , HORVU6Hr1G085120.60 , HORVU5Hr1G079570.13 , HORVU5Hr1G079570.11 , HORVU5Hr1G079570.10 , HORVU5Hr1G079570.17 , HORVU5Hr1G079570.16 , HORVU5Hr1G079570.15 , HORVU5Hr1G079570.14 , HORVU5Hr1G079570.19 , HORVU6Hr1G085120.4 , HORVU6Hr1G085120.6 , HORVU6Hr1G085120.1 , HORVU6Hr1G085120.2 , HORVU6Hr1G085120.3 , HORVU6Hr1G085120.29 , HORVU6Hr1G085120.28 , HORVU6Hr1G085120.27 , HORVU6Hr1G085120.26 , HORVU6Hr1G085120.25 , HORVU6Hr1G085120.24 , HORVU6Hr1G085120.23 , HORVU6Hr1G085120.22 , HORVU6Hr1G085120.21 , HORVU6Hr1G085120.20 , HORVU6Hr1G085120.7 , HORVU6Hr1G085120.38 , HORVU6Hr1G085120.39 , HORVU6Hr1G085120.34 , HORVU6Hr1G085120.35 , HORVU6Hr1G085120.36 , HORVU6Hr1G085120.37 , HORVU6Hr1G085120.30 , HORVU6Hr1G085120.31 , HORVU6Hr1G085120.32 , HORVU6Hr1G085120.33 , HORVU6Hr1G085120.58 , HORVU6Hr1G085120.59 , HORVU6Hr1G085120.52 , HORVU6Hr1G085120.53 , HORVU6Hr1G085120.50 , HORVU6Hr1G085120.51 , HORVU6Hr1G085120.54 , HORVU6Hr1G085120.55 , HORVU6Hr1G085120.45 , HORVU6Hr1G085120.44 , HORVU6Hr1G085120.47 , HORVU6Hr1G085120.46 , HORVU6Hr1G085120.41 , HORVU6Hr1G085120.40 , HORVU6Hr1G085120.43 , HORVU6Hr1G085120.42 , HORVU6Hr1G085120.49 , HORVU6Hr1G085120.48 , HORVU6Hr1G085120.5 , HORVU6Hr1G085120.8 , HORVU6Hr1G085120.9 , HORVU5Hr1G079570.12 , HORVU5Hr1G079570.18 , HORVU5Hr1G079570.3 , HORVU5Hr1G079570.2 , HORVU5Hr1G079570.1 , HORVU5Hr1G079570.7 , HORVU5Hr1G079570.6 , HORVU5Hr1G079570.5 , HORVU5Hr1G079570.4 , HORVU5Hr1G079570.9 , HORVU5Hr1G079570.8 , HORVU6Hr1G085120.56 , HORVU6Hr1G085120.57 , HORVU5Hr1G079570.20 , HORVU5Hr1G079570.21
Wheat TraesCS5D02G311000 , TraesCS5B02G304400 , TraesCS6D02G339400 , TraesCS6D02G339400 , TraesCS5A02G304200 , TraesCS6B02G389400 , TraesCS6A02G357400 , TraesCS6A02G357400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G264600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
2 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
3 Sobic.003G398400 expressed protein -
4 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
5 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
6 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
7 Sobic.001G313400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
8 Sobic.003G064700 expressed protein -
9 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
10 Sobic.009G214900 expressed protein -
11 Sobic.006G244300 expressed protein -
12 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
13 Sobic.009G126600 cyclin-dependent kinase D-1, putative, expressed K02202: cyclin-dependent kinase 7
14 Sobic.004G236800 MAG2, putative, expressed -
15 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
16 Sobic.006G128100 lipase, putative, expressed -
17 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
18 Sobic.009G260650 - -
19 Sobic.004G122900 gamma-secretase subunit APH-1B, putative, expressed -
20 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24


Gene co-expression network
sample Sobic002G264600 Sobic002G264600 Sobic004G345400 Sobic004G345400 Sobic002G264600--Sobic004G345400 Sobic002G164300 Sobic002G164300 Sobic002G264600--Sobic002G164300 Sobic003G398400 Sobic003G398400 Sobic002G264600--Sobic003G398400 Sobic010G185400 Sobic010G185400 Sobic002G264600--Sobic010G185400 Sobic008G149800 Sobic008G149800 Sobic002G264600--Sobic008G149800 Sobic002G357700 Sobic002G357700 Sobic002G264600--Sobic002G357700 Sobic001G313400 Sobic001G313400 Sobic002G264600--Sobic001G313400 Sobic003G064700 Sobic003G064700 Sobic002G264600--Sobic003G064700 Sobic003G189600 Sobic003G189600 Sobic002G264600--Sobic003G189600 Sobic001G042200 Sobic001G042200 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic002G164300--Sobic008G149800 Sobic002G164300--Sobic002G357700 SobicK028600 SobicK028600 Sobic002G164300--SobicK028600 Sobic004G357100 Sobic004G357100 Sobic002G164300--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G164300--Sobic002G260400 Sobic007G125000 Sobic007G125000 Sobic002G164300--Sobic007G125000 Sobic004G246100 Sobic004G246100 Sobic002G164300--Sobic004G246100 Sobic009G049400 Sobic009G049400 Sobic002G164300--Sobic009G049400 Sobic009G192300 Sobic009G192300 Sobic002G164300--Sobic009G192300 Sobic004G218300 Sobic004G218300 Sobic003G398400--Sobic004G218300 Sobic006G130200 Sobic006G130200 Sobic003G398400--Sobic006G130200 Sobic003G398400--Sobic004G084500 Sobic003G398400--Sobic003G394200 Sobic003G398400--Sobic002G164300 Sobic010G213500 Sobic010G213500 Sobic003G398400--Sobic010G213500 Sobic010G074900 Sobic010G074900 Sobic003G398400--Sobic010G074900 Sobic004G122900 Sobic004G122900 Sobic003G398400--Sobic004G122900 Sobic003G407100 Sobic003G407100 Sobic003G398400--Sobic003G407100 Sobic010G185400--Sobic003G189600 Sobic006G077200 Sobic006G077200 Sobic010G185400--Sobic006G077200 Sobic009G084900 Sobic009G084900 Sobic010G185400--Sobic009G084900 Sobic008G082500 Sobic008G082500 Sobic010G185400--Sobic008G082500 Sobic001G035200 Sobic001G035200 Sobic010G185400--Sobic001G035200 Sobic009G126600 Sobic009G126600 Sobic010G185400--Sobic009G126600 Sobic007G042400 Sobic007G042400 Sobic010G185400--Sobic007G042400 Sobic003G416700 Sobic003G416700 Sobic010G185400--Sobic003G416700 Sobic004G072100 Sobic004G072100 Sobic010G185400--Sobic004G072100 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic008G149800--Sobic002G357700 Sobic008G149800--Sobic002G164300 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic002G357700--Sobic008G149800 Sobic002G357700--Sobic006G116100 Sobic002G357700--Sobic005G154500 Sobic002G357700--Sobic002G164300 Sobic005G013200 Sobic005G013200 Sobic002G357700--Sobic005G013200 Sobic002G063900 Sobic002G063900 Sobic002G357700--Sobic002G063900 Sobic002G357700--Sobic006G186400 Sobic002G357700--Sobic008G153000 Sobic002G357700--Sobic009G126600 Sobic001G313400--Sobic003G394200 Sobic001G313400--Sobic003G189600 Sobic006G224800 Sobic006G224800 Sobic001G313400--Sobic006G224800 Sobic009G166600 Sobic009G166600 Sobic001G313400--Sobic009G166600 Sobic001G313400--Sobic004G357100 Sobic006G128100 Sobic006G128100 Sobic001G313400--Sobic006G128100 Sobic001G308400 Sobic001G308400 Sobic001G313400--Sobic001G308400 Sobic001G313400--Sobic009G249700 Sobic007G218000 Sobic007G218000 Sobic001G313400--Sobic007G218000 Sobic003G064700--Sobic002G264600 Sobic003G405500 Sobic003G405500 Sobic003G064700--Sobic003G405500 Sobic001G214600 Sobic001G214600 Sobic003G064700--Sobic001G214600 Sobic003G064700--Sobic003G189600 Sobic004G236800 Sobic004G236800 Sobic003G064700--Sobic004G236800 Sobic007G120500 Sobic007G120500 Sobic003G064700--Sobic007G120500 Sobic001G393700 Sobic001G393700 Sobic003G064700--Sobic001G393700 Sobic003G152400 Sobic003G152400 Sobic003G064700--Sobic003G152400 Sobic002G308500 Sobic002G308500 Sobic003G064700--Sobic002G308500 Sobic005G110499 Sobic005G110499 Sobic003G189600--Sobic005G110499 Sobic003G189600--Sobic010G185400 Sobic003G189600--Sobic007G218000 Sobic003G189600--Sobic006G077200 Sobic003G189600--Sobic003G394200 Sobic003G189600--Sobic006G224800 Sobic003G189600--Sobic009G249700 Sobic003G189600--Sobic001G308400 Sobic004G322400 Sobic004G322400 Sobic003G189600--Sobic004G322400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.