Gene annotation
Transcriptome id Sobic.009G210600.1
Synonym NIG
Functional annotation GTPase-activating protein, putative, expressed
UniProt A0A1B6P9N5
Pfam PF01412
Panther DB PTHR23180 PTHR23180:SF202
NCBI CDD KOG0702; Predicted GTPase-activating protein
KEGG Orthology -
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT1G08680 : ARF GAP-like zinc finger-containing protein ZIGA4
RAP-DB (Rice) LOC_Os05g45840.1 : GTPase-activating protein, putative, expressed
MaizeGDB (Corn) Zm00025a051093 , Zm00025a044349 , Zm00025a051143
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G210600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G255200 CSLE2 - cellulose synthase-like family E, expressed -
2 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
3 Sobic.005G086100 glutathione S-transferase, N-terminal domain containing protein, expressed K01800: maiA, maleylacetoacetate isomerase
4 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
5 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
6 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
7 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
8 Sobic.004G225100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K01501: nitrilase
9 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
10 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.002G113100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
12 Sobic.001G427200 josephin, putative, expressed K15235: josephin
13 Sobic.009G099500 expressed protein -
14 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
15 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.003G388251 - K01166: ribonuclease T2
17 Sobic.003G333501 - -
18 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
19 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
20 Sobic.004G167400 expressed protein -


Gene co-expression network
sample Sobic009G210600 Sobic009G210600 Sobic004G255200 Sobic004G255200 Sobic009G210600--Sobic004G255200 Sobic010G210200 Sobic010G210200 Sobic009G210600--Sobic010G210200 Sobic005G086100 Sobic005G086100 Sobic009G210600--Sobic005G086100 Sobic002G087800 Sobic002G087800 Sobic009G210600--Sobic002G087800 Sobic009G167700 Sobic009G167700 Sobic009G210600--Sobic009G167700 Sobic003G354400 Sobic003G354400 Sobic009G210600--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G210600--Sobic001G334600 Sobic004G225100 Sobic004G225100 Sobic009G210600--Sobic004G225100 Sobic004G345800 Sobic004G345800 Sobic009G210600--Sobic004G345800 Sobic004G255200--Sobic009G210600 Sobic001G427200 Sobic001G427200 Sobic004G255200--Sobic001G427200 Sobic004G255200--Sobic005G086100 Sobic004G174100 Sobic004G174100 Sobic004G255200--Sobic004G174100 Sobic004G255200--Sobic002G087800 Sobic004G067200 Sobic004G067200 Sobic004G255200--Sobic004G067200 Sobic003G333501 Sobic003G333501 Sobic004G255200--Sobic003G333501 Sobic009G099500 Sobic009G099500 Sobic004G255200--Sobic009G099500 Sobic004G255200--Sobic004G225100 Sobic006G132500 Sobic006G132500 Sobic010G210200--Sobic006G132500 Sobic001G132000 Sobic001G132000 Sobic010G210200--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic010G210200--Sobic005G215900 Sobic010G210200--Sobic009G167700 Sobic003G061800 Sobic003G061800 Sobic010G210200--Sobic003G061800 Sobic003G442500 Sobic003G442500 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic010G210200--Sobic009G210600 Sobic003G061400 Sobic003G061400 Sobic010G210200--Sobic003G061400 Sobic002G113100 Sobic002G113100 Sobic005G086100--Sobic002G113100 Sobic007G068900 Sobic007G068900 Sobic005G086100--Sobic007G068900 Sobic005G086100--Sobic009G210600 Sobic007G007000 Sobic007G007000 Sobic005G086100--Sobic007G007000 Sobic005G086100--Sobic003G354400 Sobic005G044800 Sobic005G044800 Sobic005G086100--Sobic005G044800 Sobic006G049300 Sobic006G049300 Sobic005G086100--Sobic006G049300 Sobic001G508100 Sobic001G508100 Sobic005G086100--Sobic001G508100 Sobic009G217100 Sobic009G217100 Sobic005G086100--Sobic009G217100 Sobic005G024900 Sobic005G024900 Sobic002G087800--Sobic005G024900 Sobic009G057300 Sobic009G057300 Sobic002G087800--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G087800--Sobic003G388251 Sobic009G226600 Sobic009G226600 Sobic002G087800--Sobic009G226600 Sobic003G241500 Sobic003G241500 Sobic002G087800--Sobic003G241500 Sobic001G474500 Sobic001G474500 Sobic002G087800--Sobic001G474500 Sobic002G087800--Sobic003G061800 Sobic001G305800 Sobic001G305800 Sobic002G087800--Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic002G087800--Sobic005G178100 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic004G102400 Sobic004G102400 Sobic009G167700--Sobic004G102400 Sobic001G386400 Sobic001G386400 Sobic009G167700--Sobic001G386400 Sobic010G016400 Sobic010G016400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic006G119200 Sobic006G119200 Sobic009G167700--Sobic006G119200 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900 Sobic001G334600--Sobic009G057300 Sobic001G334600--Sobic003G354400 Sobic004G101900 Sobic004G101900 Sobic001G334600--Sobic004G101900 Sobic001G334600--Sobic003G061800 Sobic001G334600--Sobic001G111150 Sobic001G334600--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic001G334600--Sobic006G199000 Sobic001G015500 Sobic001G015500 Sobic001G334600--Sobic001G015500 Sobic010G264700 Sobic010G264700 Sobic001G334600--Sobic010G264700 Sobic004G225200 Sobic004G225200 Sobic004G225100--Sobic004G225200 Sobic004G225100--Sobic002G244100 Sobic004G225100--Sobic001G334600 Sobic004G225100--Sobic009G167700 Sobic004G225100--Sobic003G388251 Sobic004G225100--Sobic005G178100 Sobic004G225100--Sobic003G354400 Sobic004G225100--Sobic001G305800 Sobic004G225100--Sobic002G087800 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G321800 Sobic004G321800 Sobic004G345800--Sobic004G321800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.