Gene annotation
Transcriptome id Sobic.002G113100.1
Synonym Sb02g009660
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5X4A5
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF113
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G15610 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os07g26110.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045708 , Zm00025a013323
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
2 Sobic.005G086100 glutathione S-transferase, N-terminal domain containing protein, expressed K01800: maiA, maleylacetoacetate isomerase
3 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
4 Sobic.010G239700 cysteine-rich RLK (RECEPTOR-like protein kinase) 10(PubMedID : 28640841)@TKL_IRAK_DUF26-lh.6 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.009G210600 GTPase-activating protein, putative, expressed -
6 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
7 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
8 Sobic.006G049300 nitrate-induced NOI protein, expressed K13456: RPM1-interacting protein 4
9 Sobic.004G225100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K01501: nitrilase
10 Sobic.003G291200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
11 Sobic.006G003400 expressed protein -
12 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
14 Sobic.010G264700 - -
15 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
17 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
19 Sobic.003G333501 - -
20 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -


Gene co-expression network
sample Sobic002G113100 Sobic002G113100 Sobic003G442500 Sobic003G442500 Sobic002G113100--Sobic003G442500 Sobic005G086100 Sobic005G086100 Sobic002G113100--Sobic005G086100 Sobic003G061800 Sobic003G061800 Sobic002G113100--Sobic003G061800 Sobic010G239700 Sobic010G239700 Sobic002G113100--Sobic010G239700 Sobic009G210600 Sobic009G210600 Sobic002G113100--Sobic009G210600 Sobic002G087800 Sobic002G087800 Sobic002G113100--Sobic002G087800 Sobic004G006200 Sobic004G006200 Sobic002G113100--Sobic004G006200 Sobic006G049300 Sobic006G049300 Sobic002G113100--Sobic006G049300 Sobic004G225100 Sobic004G225100 Sobic002G113100--Sobic004G225100 Sobic003G061400 Sobic003G061400 Sobic003G442500--Sobic003G061400 Sobic010G210200 Sobic010G210200 Sobic003G442500--Sobic010G210200 Sobic010G176700 Sobic010G176700 Sobic003G442500--Sobic010G176700 Sobic004G333200 Sobic004G333200 Sobic003G442500--Sobic004G333200 Sobic003G442500--Sobic002G113100 Sobic003G442500--Sobic003G061800 Sobic001G409200 Sobic001G409200 Sobic003G442500--Sobic001G409200 Sobic003G111300 Sobic003G111300 Sobic003G442500--Sobic003G111300 Sobic001G010400 Sobic001G010400 Sobic003G442500--Sobic001G010400 Sobic005G086100--Sobic002G113100 Sobic007G068900 Sobic007G068900 Sobic005G086100--Sobic007G068900 Sobic005G086100--Sobic009G210600 Sobic007G007000 Sobic007G007000 Sobic005G086100--Sobic007G007000 Sobic003G354400 Sobic003G354400 Sobic005G086100--Sobic003G354400 Sobic005G044800 Sobic005G044800 Sobic005G086100--Sobic005G044800 Sobic005G086100--Sobic006G049300 Sobic001G508100 Sobic001G508100 Sobic005G086100--Sobic001G508100 Sobic009G217100 Sobic009G217100 Sobic005G086100--Sobic009G217100 Sobic009G057300 Sobic009G057300 Sobic003G061800--Sobic009G057300 Sobic004G345800 Sobic004G345800 Sobic003G061800--Sobic004G345800 Sobic003G061800--Sobic003G354400 Sobic001G474500 Sobic001G474500 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic010G239700--Sobic006G049300 Sobic010G239700--Sobic007G007000 Sobic010G239700--Sobic004G006200 Sobic003G344900 Sobic003G344900 Sobic010G239700--Sobic003G344900 Sobic010G239700--Sobic009G217100 Sobic001G137300 Sobic001G137300 Sobic010G239700--Sobic001G137300 Sobic001G123000 Sobic001G123000 Sobic010G239700--Sobic001G123000 Sobic010G239700--Sobic002G113100 Sobic004G348300 Sobic004G348300 Sobic010G239700--Sobic004G348300 Sobic004G255200 Sobic004G255200 Sobic009G210600--Sobic004G255200 Sobic009G210600--Sobic010G210200 Sobic009G210600--Sobic005G086100 Sobic009G210600--Sobic002G087800 Sobic009G167700 Sobic009G167700 Sobic009G210600--Sobic009G167700 Sobic009G210600--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G210600--Sobic001G334600 Sobic009G210600--Sobic004G225100 Sobic009G210600--Sobic004G345800 Sobic005G024900 Sobic005G024900 Sobic002G087800--Sobic005G024900 Sobic002G087800--Sobic009G057300 Sobic002G087800--Sobic003G388251 Sobic009G226600 Sobic009G226600 Sobic002G087800--Sobic009G226600 Sobic003G241500 Sobic003G241500 Sobic002G087800--Sobic003G241500 Sobic002G087800--Sobic001G474500 Sobic002G087800--Sobic003G061800 Sobic001G305800 Sobic001G305800 Sobic002G087800--Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic002G087800--Sobic005G178100 Sobic002G132000 Sobic002G132000 Sobic004G006200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic004G006200--Sobic004G295800 Sobic007G024700 Sobic007G024700 Sobic004G006200--Sobic007G024700 Sobic007G062600 Sobic007G062600 Sobic004G006200--Sobic007G062600 Sobic004G052900 Sobic004G052900 Sobic004G006200--Sobic004G052900 Sobic004G264400 Sobic004G264400 Sobic004G006200--Sobic004G264400 Sobic002G424000 Sobic002G424000 Sobic004G006200--Sobic002G424000 Sobic001G199100 Sobic001G199100 Sobic004G006200--Sobic001G199100 Sobic003G012200 Sobic003G012200 Sobic004G006200--Sobic003G012200 Sobic006G049300--Sobic003G354400 Sobic006G049300--Sobic010G239700 Sobic006G049300--Sobic004G006200 Sobic006G049300--Sobic007G007000 Sobic004G183600 Sobic004G183600 Sobic006G049300--Sobic004G183600 Sobic006G049300--Sobic004G348300 Sobic006G049300--Sobic003G344900 Sobic006G049300--Sobic009G217100 Sobic004G167400 Sobic004G167400 Sobic006G049300--Sobic004G167400 Sobic004G225200 Sobic004G225200 Sobic004G225100--Sobic004G225200 Sobic002G244100 Sobic002G244100 Sobic004G225100--Sobic002G244100 Sobic004G225100--Sobic001G334600 Sobic004G225100--Sobic009G167700 Sobic004G225100--Sobic003G388251 Sobic004G225100--Sobic005G178100 Sobic004G225100--Sobic003G354400 Sobic004G225100--Sobic001G305800 Sobic004G225100--Sobic002G087800
Octagon: transcription factors


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