Gene annotation
Transcriptome id Sobic.003G291200.2,Sobic.003G291200.3,Sobic.003G291200.4,Sobic.003G291200.1,Sobic.003G291200.5
Synonym SbIAA11, Sb03g034170, SbIAA11;auxin/indole-3-acetic acid (Aux/IAA), auxin/indole-3-acetic acid (Aux/IAA), IAA26, PAP1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A1B6Q5Z4 , A0A1B6Q5Z9 , A0A1B6Q5Z3
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF42
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G16500 : phytochrome-associated protein 1
RAP-DB (Rice) LOC_Os01g53880.5,LOC_Os01g53880.3,LOC_Os01g53880.4 : OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a027653
Brachypodium KQK09659 , KQK09658 , KQK09662 , KQK09663 , KQK09660 , KQK09661 , KQK09664 , PNT72821 , PNT72820 , PNT72822 , PNT72819
Barley HORVU3Hr1G070620.2 , HORVU3Hr1G070620.3 , HORVU3Hr1G070620.1 , HORVU3Hr1G070620.6 , HORVU3Hr1G070620.7 , HORVU3Hr1G070620.4 , HORVU3Hr1G070620.5 , HORVU3Hr1G070620.8 , HORVU3Hr1G070620.9 , HORVU3Hr1G070620.10 , HORVU3Hr1G070620.11 , HORVU3Hr1G070620.12 , HORVU3Hr1G070620.13 , HORVU3Hr1G070620.14 , HORVU3Hr1G070620.15 , HORVU3Hr1G070620.16 , HORVU3Hr1G070620.17 , HORVU3Hr1G070620.18 , HORVU3Hr1G070620.19
Wheat -
Populus -


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cDNA sequences
Sobic.003G291200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
2 Sobic.001G000700 glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
3 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
4 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.001G459600 expressed protein -
6 Sobic.004G225100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K01501: nitrilase
7 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
8 Sobic.001G496100 - -
9 Sobic.002G113100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
10 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
11 Sobic.001G508100 expressed protein -
12 Sobic.010G264700 - -
13 Sobic.001G000501 - -
14 Sobic.009G210600 GTPase-activating protein, putative, expressed -
15 Sobic.003G322700 expressed protein -
16 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
17 Sobic.002G249300 auxin efflux carrier component, putative, expressed -
18 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
20 Sobic.001G223550 - -


Gene co-expression network
sample Sobic003G291200 Sobic003G291200 Sobic004G225200 Sobic004G225200 Sobic003G291200--Sobic004G225200 Sobic001G000700 Sobic001G000700 Sobic003G291200--Sobic001G000700 Sobic004G261900 Sobic004G261900 Sobic003G291200--Sobic004G261900 Sobic004G034600 Sobic004G034600 Sobic003G291200--Sobic004G034600 Sobic001G459600 Sobic001G459600 Sobic003G291200--Sobic001G459600 Sobic004G225100 Sobic004G225100 Sobic003G291200--Sobic004G225100 Sobic001G334600 Sobic001G334600 Sobic003G291200--Sobic001G334600 Sobic001G496100 Sobic001G496100 Sobic003G291200--Sobic001G496100 Sobic002G113100 Sobic002G113100 Sobic003G291200--Sobic002G113100 Sobic004G225200--Sobic004G225100 Sobic001G282600 Sobic001G282600 Sobic004G225200--Sobic001G282600 Sobic002G266000 Sobic002G266000 Sobic004G225200--Sobic002G266000 Sobic006G199000 Sobic006G199000 Sobic004G225200--Sobic006G199000 Sobic003G398100 Sobic003G398100 Sobic004G225200--Sobic003G398100 Sobic006G104600 Sobic006G104600 Sobic004G225200--Sobic006G104600 Sobic004G071200 Sobic004G071200 Sobic004G225200--Sobic004G071200 Sobic003G322700 Sobic003G322700 Sobic004G225200--Sobic003G322700 Sobic005G178100 Sobic005G178100 Sobic004G225200--Sobic005G178100 Sobic001G000501 Sobic001G000501 Sobic001G000700--Sobic001G000501 Sobic001G000700--Sobic001G459600 Sobic001G000700--Sobic001G496100 Sobic005G089400 Sobic005G089400 Sobic001G000700--Sobic005G089400 Sobic001G517800 Sobic001G517800 Sobic001G000700--Sobic001G517800 Sobic001G000700--Sobic003G291200 Sobic001G233300 Sobic001G233300 Sobic001G000700--Sobic001G233300 Sobic005G149700 Sobic005G149700 Sobic001G000700--Sobic005G149700 Sobic001G000700--Sobic004G034600 Sobic001G504900 Sobic001G504900 Sobic004G261900--Sobic001G504900 Sobic004G261900--Sobic002G266000 Sobic004G261900--Sobic004G034600 Sobic004G261900--Sobic003G322700 Sobic004G261900--Sobic003G398100 Sobic004G261900--Sobic004G225200 Sobic004G261900--Sobic005G149700 Sobic009G207600 Sobic009G207600 Sobic004G261900--Sobic009G207600 Sobic004G261900--Sobic001G517800 Sobic004G034600--Sobic005G149700 Sobic002G249300 Sobic002G249300 Sobic004G034600--Sobic002G249300 Sobic004G034600--Sobic001G517800 Sobic009G011600 Sobic009G011600 Sobic004G034600--Sobic009G011600 Sobic004G034600--Sobic002G266000 Sobic004G034600--Sobic001G459600 Sobic004G034600--Sobic003G322700 Sobic001G223550 Sobic001G223550 Sobic004G034600--Sobic001G223550 Sobic004G034600--Sobic004G261900 Sobic001G459600--Sobic001G517800 Sobic001G459600--Sobic001G000501 Sobic001G459600--Sobic004G034600 Sobic001G459600--Sobic001G000700 Sobic002G418800 Sobic002G418800 Sobic001G459600--Sobic002G418800 Sobic008G084300 Sobic008G084300 Sobic001G459600--Sobic008G084300 Sobic008G166550 Sobic008G166550 Sobic001G459600--Sobic008G166550 Sobic001G459600--Sobic001G223550 Sobic005G133600 Sobic005G133600 Sobic001G459600--Sobic005G133600 Sobic004G225100--Sobic004G225200 Sobic002G244100 Sobic002G244100 Sobic004G225100--Sobic002G244100 Sobic004G225100--Sobic001G334600 Sobic009G167700 Sobic009G167700 Sobic004G225100--Sobic009G167700 Sobic003G388251 Sobic003G388251 Sobic004G225100--Sobic003G388251 Sobic004G225100--Sobic005G178100 Sobic003G354400 Sobic003G354400 Sobic004G225100--Sobic003G354400 Sobic001G305800 Sobic001G305800 Sobic004G225100--Sobic001G305800 Sobic002G087800 Sobic002G087800 Sobic004G225100--Sobic002G087800 Sobic009G057300 Sobic009G057300 Sobic001G334600--Sobic009G057300 Sobic001G334600--Sobic003G354400 Sobic004G101900 Sobic004G101900 Sobic001G334600--Sobic004G101900 Sobic003G061800 Sobic003G061800 Sobic001G334600--Sobic003G061800 Sobic001G111150 Sobic001G111150 Sobic001G334600--Sobic001G111150 Sobic001G334600--Sobic004G225100 Sobic001G334600--Sobic006G199000 Sobic001G015500 Sobic001G015500 Sobic001G334600--Sobic001G015500 Sobic010G264700 Sobic010G264700 Sobic001G334600--Sobic010G264700 Sobic001G496100--Sobic003G398100 Sobic001G496100--Sobic009G207600 Sobic001G496100--Sobic009G011600 Sobic009G006400 Sobic009G006400 Sobic001G496100--Sobic009G006400 Sobic001G496100--Sobic006G199000 Sobic001G496100--Sobic004G225200 Sobic001G496100--Sobic002G266000 Sobic001G496100--Sobic005G149700 Sobic008G153400 Sobic008G153400 Sobic001G496100--Sobic008G153400 Sobic003G442500 Sobic003G442500 Sobic002G113100--Sobic003G442500 Sobic005G086100 Sobic005G086100 Sobic002G113100--Sobic005G086100 Sobic002G113100--Sobic003G061800 Sobic010G239700 Sobic010G239700 Sobic002G113100--Sobic010G239700 Sobic009G210600 Sobic009G210600 Sobic002G113100--Sobic009G210600 Sobic002G113100--Sobic002G087800 Sobic004G006200 Sobic004G006200 Sobic002G113100--Sobic004G006200 Sobic006G049300 Sobic006G049300 Sobic002G113100--Sobic006G049300 Sobic002G113100--Sobic004G225100
Octagon: transcription factors


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