Gene annotation
Transcriptome id Sobic.010G264700.4,Sobic.010G264700.3
Synonym
Functional annotation -
UniProt A0A194YLQ2
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
2 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
3 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
4 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
5 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
6 Sobic.007G062600 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
7 Sobic.001G137100 homeodomain protein, putative, expressed -
8 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.008G191100 nodulin, putative, expressed -
10 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
11 Sobic.006G192700 expressed protein -
12 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
13 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
14 Sobic.006G049300 nitrate-induced NOI protein, expressed K13456: RPM1-interacting protein 4
15 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G291200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
17 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
18 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
19 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
20 Sobic.002G113100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G264700 Sobic010G264700 Sobic004G006200 Sobic004G006200 Sobic010G264700--Sobic004G006200 Sobic001G334600 Sobic001G334600 Sobic010G264700--Sobic001G334600 Sobic004G295800 Sobic004G295800 Sobic010G264700--Sobic004G295800 Sobic002G132000 Sobic002G132000 Sobic010G264700--Sobic002G132000 Sobic009G057300 Sobic009G057300 Sobic010G264700--Sobic009G057300 Sobic007G062600 Sobic007G062600 Sobic010G264700--Sobic007G062600 Sobic001G137100 Sobic001G137100 Sobic010G264700--Sobic001G137100 Sobic002G244100 Sobic002G244100 Sobic010G264700--Sobic002G244100 Sobic008G191100 Sobic008G191100 Sobic010G264700--Sobic008G191100 Sobic004G006200--Sobic002G132000 Sobic004G006200--Sobic004G295800 Sobic007G024700 Sobic007G024700 Sobic004G006200--Sobic007G024700 Sobic004G006200--Sobic007G062600 Sobic004G052900 Sobic004G052900 Sobic004G006200--Sobic004G052900 Sobic004G264400 Sobic004G264400 Sobic004G006200--Sobic004G264400 Sobic002G424000 Sobic002G424000 Sobic004G006200--Sobic002G424000 Sobic001G199100 Sobic001G199100 Sobic004G006200--Sobic001G199100 Sobic003G012200 Sobic003G012200 Sobic004G006200--Sobic003G012200 Sobic001G334600--Sobic009G057300 Sobic003G354400 Sobic003G354400 Sobic001G334600--Sobic003G354400 Sobic004G101900 Sobic004G101900 Sobic001G334600--Sobic004G101900 Sobic003G061800 Sobic003G061800 Sobic001G334600--Sobic003G061800 Sobic001G111150 Sobic001G111150 Sobic001G334600--Sobic001G111150 Sobic004G225100 Sobic004G225100 Sobic001G334600--Sobic004G225100 Sobic006G199000 Sobic006G199000 Sobic001G334600--Sobic006G199000 Sobic001G015500 Sobic001G015500 Sobic001G334600--Sobic001G015500 Sobic001G334600--Sobic010G264700 Sobic004G295800--Sobic008G191100 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic009G121100 Sobic009G121100 Sobic004G295800--Sobic009G121100 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic001G373200 Sobic001G373200 Sobic004G295800--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic004G295800--Sobic003G407300 Sobic001G290000 Sobic001G290000 Sobic004G295800--Sobic001G290000 Sobic002G132000--Sobic004G006200 Sobic002G132000--Sobic004G264400 Sobic002G132000--Sobic007G024700 Sobic002G132000--Sobic004G295800 Sobic001G109800 Sobic001G109800 Sobic002G132000--Sobic001G109800 Sobic002G132000--Sobic001G290000 Sobic009G113000 Sobic009G113000 Sobic002G132000--Sobic009G113000 Sobic003G305200 Sobic003G305200 Sobic002G132000--Sobic003G305200 Sobic002G132000--Sobic001G137100 Sobic009G057300--Sobic003G061800 Sobic001G474500 Sobic001G474500 Sobic009G057300--Sobic001G474500 Sobic007G068100 Sobic007G068100 Sobic009G057300--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic009G057300--Sobic001G325200 Sobic003G388251 Sobic003G388251 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic009G057300--Sobic003G354400 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic007G062600--Sobic004G006200 Sobic003G433100 Sobic003G433100 Sobic007G062600--Sobic003G433100 Sobic009G207000 Sobic009G207000 Sobic007G062600--Sobic009G207000 Sobic003G063000 Sobic003G063000 Sobic007G062600--Sobic003G063000 Sobic009G228700 Sobic009G228700 Sobic007G062600--Sobic009G228700 Sobic006G249700 Sobic006G249700 Sobic007G062600--Sobic006G249700 Sobic009G154800 Sobic009G154800 Sobic007G062600--Sobic009G154800 Sobic009G259400 Sobic009G259400 Sobic007G062600--Sobic009G259400 Sobic004G104900 Sobic004G104900 Sobic007G062600--Sobic004G104900 Sobic001G390800 Sobic001G390800 Sobic001G137100--Sobic001G390800 Sobic001G137100--Sobic007G024700 Sobic010G228400 Sobic010G228400 Sobic001G137100--Sobic010G228400 Sobic001G137100--Sobic002G132000 Sobic001G270400 Sobic001G270400 Sobic001G137100--Sobic001G270400 Sobic002G130800 Sobic002G130800 Sobic001G137100--Sobic002G130800 Sobic009G094300 Sobic009G094300 Sobic001G137100--Sobic009G094300 Sobic002G111000 Sobic002G111000 Sobic001G137100--Sobic002G111000 Sobic002G427050 Sobic002G427050 Sobic001G137100--Sobic002G427050 Sobic009G167700 Sobic009G167700 Sobic002G244100--Sobic009G167700 Sobic001G089800 Sobic001G089800 Sobic002G244100--Sobic001G089800 Sobic008G093000 Sobic008G093000 Sobic002G244100--Sobic008G093000 Sobic002G244100--Sobic004G225100 Sobic002G244100--Sobic003G354400 Sobic010G064600 Sobic010G064600 Sobic002G244100--Sobic010G064600 Sobic004G167400 Sobic004G167400 Sobic002G244100--Sobic004G167400 Sobic002G244100--Sobic001G334600 Sobic009G126900 Sobic009G126900 Sobic002G244100--Sobic009G126900 Sobic008G191100--Sobic004G295800 Sobic008G191100--Sobic001G290000 Sobic008G191100--Sobic002G132000 Sobic006G214500 Sobic006G214500 Sobic008G191100--Sobic006G214500 Sobic008G191100--Sobic001G373200 Sobic003G093300 Sobic003G093300 Sobic008G191100--Sobic003G093300 Sobic008G191100--Sobic003G433100 Sobic008G191100--Sobic007G024700 Sobic008G191100--Sobic009G126900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.