Gene annotation
Transcriptome id Sobic.001G454200.1
Synonym
Functional annotation -
UniProt A0A1B6QPK0
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G276000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY26, expressed -
2 Sobic.008G090800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein copper ion binding protein (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
3 Sobic.003G363100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialyltransferase family domain containing protein, expressed -
4 Sobic.010G162900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
5 Sobic.010G018100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
6 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.001G318900 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.004G182300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MLO domain containing protein, putative, expressed K08472: mlo protein
9 Sobic.001G146200 OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
10 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
11 Sobic.001G363300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.010G044700 leucine zipper protein-like, putative, expressed -
13 Sobic.003G000600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY1, expressed -
14 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
15 Sobic.007G125900 protein kinase domain containing protein, expressed -
16 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.006G061300 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
18 Sobic.009G241300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.001G288100 zinc-binding protein, putative, expressed -
20 Sobic.006G007800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@legume lectins beta domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G454200 Sobic001G454200 Sobic003G276000 Sobic003G276000 Sobic001G454200--Sobic003G276000 Sobic008G090800 Sobic008G090800 Sobic001G454200--Sobic008G090800 Sobic003G363100 Sobic003G363100 Sobic001G454200--Sobic003G363100 Sobic010G162900 Sobic010G162900 Sobic001G454200--Sobic010G162900 Sobic010G018100 Sobic010G018100 Sobic001G454200--Sobic010G018100 Sobic005G217200 Sobic005G217200 Sobic001G454200--Sobic005G217200 Sobic001G318900 Sobic001G318900 Sobic001G454200--Sobic001G318900 Sobic004G182300 Sobic004G182300 Sobic001G454200--Sobic004G182300 Sobic001G146200 Sobic001G146200 Sobic001G454200--Sobic001G146200 Sobic003G276000--Sobic010G162900 Sobic003G276000--Sobic008G090800 Sobic003G276000--Sobic001G454200 Sobic003G276000--Sobic005G217200 Sobic008G189200 Sobic008G189200 Sobic003G276000--Sobic008G189200 Sobic003G000600 Sobic003G000600 Sobic003G276000--Sobic003G000600 Sobic003G276000--Sobic010G018100 Sobic003G276000--Sobic003G363100 Sobic003G276000--Sobic001G318900 Sobic008G090800--Sobic003G276000 Sobic008G090800--Sobic001G454200 Sobic008G090800--Sobic010G162900 Sobic009G142200 Sobic009G142200 Sobic008G090800--Sobic009G142200 Sobic008G090800--Sobic003G000600 Sobic008G090800--Sobic001G146200 Sobic003G294350 Sobic003G294350 Sobic008G090800--Sobic003G294350 Sobic009G038501 Sobic009G038501 Sobic008G090800--Sobic009G038501 Sobic008G144500 Sobic008G144500 Sobic008G090800--Sobic008G144500 Sobic001G469500 Sobic001G469500 Sobic003G363100--Sobic001G469500 Sobic003G363100--Sobic005G217200 Sobic003G363100--Sobic010G018100 Sobic009G000200 Sobic009G000200 Sobic003G363100--Sobic009G000200 Sobic003G363100--Sobic008G189200 Sobic007G135000 Sobic007G135000 Sobic003G363100--Sobic007G135000 Sobic004G028600 Sobic004G028600 Sobic003G363100--Sobic004G028600 Sobic002G274800 Sobic002G274800 Sobic003G363100--Sobic002G274800 Sobic003G363100--Sobic003G276000 Sobic010G162900--Sobic003G276000 Sobic007G035000 Sobic007G035000 Sobic010G162900--Sobic007G035000 Sobic010G162900--Sobic008G189200 Sobic008G190900 Sobic008G190900 Sobic010G162900--Sobic008G190900 Sobic010G162900--Sobic005G217200 Sobic010G162900--Sobic001G454200 Sobic010G162900--Sobic010G018100 Sobic007G225900 Sobic007G225900 Sobic010G162900--Sobic007G225900 Sobic010G162900--Sobic002G274800 Sobic010G043400 Sobic010G043400 Sobic010G018100--Sobic010G043400 Sobic001G222200 Sobic001G222200 Sobic010G018100--Sobic001G222200 Sobic010G018100--Sobic002G274800 Sobic004G124200 Sobic004G124200 Sobic010G018100--Sobic004G124200 Sobic001G320200 Sobic001G320200 Sobic010G018100--Sobic001G320200 Sobic010G018100--Sobic003G363100 Sobic010G018100--Sobic008G189200 Sobic003G388251 Sobic003G388251 Sobic010G018100--Sobic003G388251 Sobic002G215800 Sobic002G215800 Sobic010G018100--Sobic002G215800 Sobic005G217200--Sobic008G189200 Sobic010G210200 Sobic010G210200 Sobic005G217200--Sobic010G210200 Sobic005G217200--Sobic003G363100 Sobic009G126900 Sobic009G126900 Sobic005G217200--Sobic009G126900 Sobic004G237600 Sobic004G237600 Sobic005G217200--Sobic004G237600 Sobic005G217200--Sobic003G276000 Sobic003G244600 Sobic003G244600 Sobic005G217200--Sobic003G244600 Sobic005G217200--Sobic010G162900 Sobic002G172900 Sobic002G172900 Sobic005G217200--Sobic002G172900 Sobic003G376200 Sobic003G376200 Sobic001G318900--Sobic003G376200 Sobic001G318900--Sobic003G276000 Sobic001G318900--Sobic001G146200 Sobic002G273700 Sobic002G273700 Sobic001G318900--Sobic002G273700 Sobic001G318900--Sobic003G363100 Sobic001G318900--Sobic001G454200 Sobic006G246300 Sobic006G246300 Sobic001G318900--Sobic006G246300 Sobic001G318900--Sobic010G018100 Sobic001G318900--Sobic005G217200 Sobic007G196600 Sobic007G196600 Sobic004G182300--Sobic007G196600 Sobic001G074200 Sobic001G074200 Sobic004G182300--Sobic001G074200 Sobic003G146100 Sobic003G146100 Sobic004G182300--Sobic003G146100 Sobic001G157200 Sobic001G157200 Sobic004G182300--Sobic001G157200 Sobic002G379866 Sobic002G379866 Sobic004G182300--Sobic002G379866 Sobic001G314700 Sobic001G314700 Sobic004G182300--Sobic001G314700 Sobic009G171600 Sobic009G171600 Sobic004G182300--Sobic009G171600 Sobic002G222800 Sobic002G222800 Sobic004G182300--Sobic002G222800 Sobic004G058000 Sobic004G058000 Sobic004G182300--Sobic004G058000 Sobic001G146200--Sobic003G276000 Sobic001G146200--Sobic001G318900 Sobic001G146200--Sobic001G454200 Sobic003G216232 Sobic003G216232 Sobic001G146200--Sobic003G216232 Sobic001G146200--Sobic005G217200 Sobic003G031100 Sobic003G031100 Sobic001G146200--Sobic003G031100 Sobic010G047800 Sobic010G047800 Sobic001G146200--Sobic010G047800 Sobic007G074400 Sobic007G074400 Sobic001G146200--Sobic007G074400 Sobic001G146200--Sobic010G018100
Octagon: transcription factors


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