Gene annotation
Transcriptome id Sobic.008G090800.1
Synonym Sb08g011530, LAC7,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Protein copper ion binding protein (Os) (PubMedID : 27208977)
laccase precursor protein, putative, expressed
UniProt C5YNG9
Pfam PF00394 PF07732 PF07731
Panther DB PTHR11709 PTHR11709:SF111
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT3G09220 : laccase 7
RAP-DB (Rice) LOC_Os12g15920.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a054092 , Zm00025a029611
Brachypodium KQJ91717
Barley HORVU1Hr1G008360.8 , HORVU1Hr1G008360.9 , HORVU1Hr1G008360.3 , HORVU1Hr1G008360.6 , HORVU1Hr1G008360.7 , HORVU1Hr1G008360.4 , HORVU1Hr1G008360.5 , HORVU1Hr1G008360.2 , HORVU1Hr1G008360.1
Wheat TraesCS1D02G044600 , TraesCS1B02G056900 , TraesCS1D02G044300 , TraesCS1A02G043900
Populus -


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cDNA sequences
Sobic.008G090800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G276000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY26, expressed -
2 Sobic.001G454200 - -
3 Sobic.010G162900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
4 Sobic.009G142200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
5 Sobic.003G000600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY1, expressed -
6 Sobic.001G146200 OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
7 Sobic.003G294350 - -
8 Sobic.009G038501 - -
9 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
10 Sobic.003G146000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
11 Sobic.006G168000 AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.003G146100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
13 Sobic.001G097700 - -
14 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.001G390700 VQ domain containing protein, putative, expressed -
16 Sobic.005G215766 - -
17 Sobic.007G089101 - -
18 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
19 Sobic.010G182966 - K15639: CYP734A1, PHYB activation tagged suppressor 1
20 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family


Gene co-expression network
sample Sobic008G090800 Sobic008G090800 Sobic003G276000 Sobic003G276000 Sobic008G090800--Sobic003G276000 Sobic001G454200 Sobic001G454200 Sobic008G090800--Sobic001G454200 Sobic010G162900 Sobic010G162900 Sobic008G090800--Sobic010G162900 Sobic009G142200 Sobic009G142200 Sobic008G090800--Sobic009G142200 Sobic003G000600 Sobic003G000600 Sobic008G090800--Sobic003G000600 Sobic001G146200 Sobic001G146200 Sobic008G090800--Sobic001G146200 Sobic003G294350 Sobic003G294350 Sobic008G090800--Sobic003G294350 Sobic009G038501 Sobic009G038501 Sobic008G090800--Sobic009G038501 Sobic008G144500 Sobic008G144500 Sobic008G090800--Sobic008G144500 Sobic003G276000--Sobic010G162900 Sobic003G276000--Sobic008G090800 Sobic003G276000--Sobic001G454200 Sobic005G217200 Sobic005G217200 Sobic003G276000--Sobic005G217200 Sobic008G189200 Sobic008G189200 Sobic003G276000--Sobic008G189200 Sobic003G276000--Sobic003G000600 Sobic010G018100 Sobic010G018100 Sobic003G276000--Sobic010G018100 Sobic003G363100 Sobic003G363100 Sobic003G276000--Sobic003G363100 Sobic001G318900 Sobic001G318900 Sobic003G276000--Sobic001G318900 Sobic001G454200--Sobic003G276000 Sobic001G454200--Sobic008G090800 Sobic001G454200--Sobic003G363100 Sobic001G454200--Sobic010G162900 Sobic001G454200--Sobic010G018100 Sobic001G454200--Sobic005G217200 Sobic001G454200--Sobic001G318900 Sobic004G182300 Sobic004G182300 Sobic001G454200--Sobic004G182300 Sobic001G454200--Sobic001G146200 Sobic010G162900--Sobic003G276000 Sobic007G035000 Sobic007G035000 Sobic010G162900--Sobic007G035000 Sobic010G162900--Sobic008G189200 Sobic008G190900 Sobic008G190900 Sobic010G162900--Sobic008G190900 Sobic010G162900--Sobic005G217200 Sobic010G162900--Sobic001G454200 Sobic010G162900--Sobic010G018100 Sobic007G225900 Sobic007G225900 Sobic010G162900--Sobic007G225900 Sobic002G274800 Sobic002G274800 Sobic010G162900--Sobic002G274800 Sobic003G348700 Sobic003G348700 Sobic009G142200--Sobic003G348700 Sobic003G146000 Sobic003G146000 Sobic009G142200--Sobic003G146000 Sobic009G142200--Sobic003G000600 Sobic009G142200--Sobic008G144500 Sobic002G379866 Sobic002G379866 Sobic009G142200--Sobic002G379866 Sobic010G182966 Sobic010G182966 Sobic009G142200--Sobic010G182966 Sobic004G236550 Sobic004G236550 Sobic009G142200--Sobic004G236550 Sobic002G355200 Sobic002G355200 Sobic009G142200--Sobic002G355200 Sobic001G028000 Sobic001G028000 Sobic009G142200--Sobic001G028000 Sobic003G000600--Sobic008G144500 Sobic006G086100 Sobic006G086100 Sobic003G000600--Sobic006G086100 Sobic003G000600--Sobic009G142200 Sobic003G000600--Sobic003G146000 Sobic006G086000 Sobic006G086000 Sobic003G000600--Sobic006G086000 Sobic007G125900 Sobic007G125900 Sobic003G000600--Sobic007G125900 Sobic003G000600--Sobic001G028000 Sobic003G000600--Sobic004G236550 Sobic003G000600--Sobic002G355200 Sobic001G146200--Sobic003G276000 Sobic001G146200--Sobic001G318900 Sobic001G146200--Sobic001G454200 Sobic003G216232 Sobic003G216232 Sobic001G146200--Sobic003G216232 Sobic001G146200--Sobic005G217200 Sobic003G031100 Sobic003G031100 Sobic001G146200--Sobic003G031100 Sobic010G047800 Sobic010G047800 Sobic001G146200--Sobic010G047800 Sobic007G074400 Sobic007G074400 Sobic001G146200--Sobic007G074400 Sobic001G146200--Sobic010G018100 Sobic007G089101 Sobic007G089101 Sobic003G294350--Sobic007G089101 Sobic008G049250 Sobic008G049250 Sobic003G294350--Sobic008G049250 Sobic001G146400 Sobic001G146400 Sobic003G294350--Sobic001G146400 Sobic004G169900 Sobic004G169900 Sobic003G294350--Sobic004G169900 Sobic010G097900 Sobic010G097900 Sobic003G294350--Sobic010G097900 Sobic003G294350--Sobic001G454200 Sobic003G294350--Sobic008G090800 Sobic003G146100 Sobic003G146100 Sobic003G294350--Sobic003G146100 Sobic003G294350--Sobic004G182300 Sobic009G038501--Sobic008G144500 Sobic004G236600 Sobic004G236600 Sobic009G038501--Sobic004G236600 Sobic004G236000 Sobic004G236000 Sobic009G038501--Sobic004G236000 Sobic003G360900 Sobic003G360900 Sobic009G038501--Sobic003G360900 Sobic001G251900 Sobic001G251900 Sobic009G038501--Sobic001G251900 Sobic005G152100 Sobic005G152100 Sobic009G038501--Sobic005G152100 Sobic001G212000 Sobic001G212000 Sobic009G038501--Sobic001G212000 Sobic007G178100 Sobic007G178100 Sobic009G038501--Sobic007G178100 Sobic009G236200 Sobic009G236200 Sobic009G038501--Sobic009G236200 Sobic008G144500--Sobic010G182966 Sobic008G144500--Sobic009G038501 Sobic008G144500--Sobic002G355200 Sobic009G236300 Sobic009G236300 Sobic008G144500--Sobic009G236300 Sobic008G144500--Sobic003G000600 Sobic008G144500--Sobic009G142200 Sobic008G144500--Sobic006G086100 Sobic008G144500--Sobic003G348700 Sobic005G215766 Sobic005G215766 Sobic008G144500--Sobic005G215766
Octagon: transcription factors


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