Gene annotation
Transcriptome id Sobic.001G390700.1
Synonym Sb01g037040
Functional annotation VQ domain containing protein, putative, expressed
UniProt C5X1U8
Pfam PF05678
Panther DB PTHR33624 PTHR33624:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g20330.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002220 , Zm00025a052523
Brachypodium -
Barley HORVU4Hr1G052320.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.001G097700 - -
3 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
4 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
5 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
6 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
7 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
8 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
11 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
12 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
13 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
14 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
15 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.007G145700 expressed protein -
17 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
18 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
19 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
20 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -


Gene co-expression network
sample Sobic001G390700 Sobic001G390700 Sobic001G095700 Sobic001G095700 Sobic001G390700--Sobic001G095700 Sobic001G097700 Sobic001G097700 Sobic001G390700--Sobic001G097700 Sobic003G341100 Sobic003G341100 Sobic001G390700--Sobic003G341100 Sobic009G044400 Sobic009G044400 Sobic001G390700--Sobic009G044400 Sobic004G065900 Sobic004G065900 Sobic001G390700--Sobic004G065900 Sobic007G077100 Sobic007G077100 Sobic001G390700--Sobic007G077100 Sobic002G232800 Sobic002G232800 Sobic001G390700--Sobic002G232800 Sobic010G023200 Sobic010G023200 Sobic001G390700--Sobic010G023200 Sobic003G268900 Sobic003G268900 Sobic001G390700--Sobic003G268900 Sobic001G095700--Sobic004G065900 Sobic001G095700--Sobic003G268900 Sobic002G294600 Sobic002G294600 Sobic001G095700--Sobic002G294600 Sobic002G367900 Sobic002G367900 Sobic001G095700--Sobic002G367900 Sobic007G145700 Sobic007G145700 Sobic001G095700--Sobic007G145700 Sobic006G273800 Sobic006G273800 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G064900 Sobic001G064900 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic001G097700--Sobic001G390700 Sobic001G097700--Sobic001G095700 Sobic001G097700--Sobic003G341100 Sobic001G097700--Sobic002G294600 Sobic001G097700--Sobic009G044400 Sobic004G297200 Sobic004G297200 Sobic001G097700--Sobic004G297200 Sobic001G097700--Sobic007G145700 Sobic001G097700--Sobic001G064900 Sobic006G146500 Sobic006G146500 Sobic001G097700--Sobic006G146500 Sobic009G217500 Sobic009G217500 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic010G102000 Sobic010G102000 Sobic003G341100--Sobic010G102000 Sobic001G341600 Sobic001G341600 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic009G044400--Sobic003G341100 Sobic006G078400 Sobic006G078400 Sobic009G044400--Sobic006G078400 Sobic009G044400--Sobic009G217500 Sobic009G044400--Sobic007G145700 Sobic009G044400--Sobic006G273800 Sobic009G044400--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G044400--Sobic001G035000 Sobic003G361100 Sobic003G361100 Sobic009G044400--Sobic003G361100 Sobic001G192800 Sobic001G192800 Sobic009G044400--Sobic001G192800 Sobic002G207300 Sobic002G207300 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic003G416500 Sobic003G416500 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic006G259000 Sobic006G259000 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic010G071000 Sobic010G071000 Sobic007G077100--Sobic010G071000 Sobic001G489500 Sobic001G489500 Sobic007G077100--Sobic001G489500 Sobic002G232800--Sobic010G102000 Sobic002G232800--Sobic003G341100 Sobic002G232800--Sobic009G217500 Sobic002G232800--Sobic001G341600 Sobic002G232800--Sobic007G077100 Sobic002G232800--Sobic010G023200 Sobic002G232800--Sobic010G071000 Sobic010G209100 Sobic010G209100 Sobic002G232800--Sobic010G209100 Sobic007G090300 Sobic007G090300 Sobic002G232800--Sobic007G090300 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic010G023200--Sobic001G489500 Sobic004G244100 Sobic004G244100 Sobic003G268900--Sobic004G244100 Sobic003G268900--Sobic001G095700 Sobic003G268900--Sobic002G367900 Sobic002G217100 Sobic002G217100 Sobic003G268900--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic003G268900--Sobic006G210300 Sobic002G197600 Sobic002G197600 Sobic003G268900--Sobic002G197600 Sobic004G244300 Sobic004G244300 Sobic003G268900--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic003G268900--Sobic009G167000 Sobic004G281200 Sobic004G281200 Sobic003G268900--Sobic004G281200
Octagon: transcription factors


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