Gene annotation
Transcriptome id Sobic.007G077300.1
Synonym SbERF78, ATERF11,ethylene response factor 78, ERF11, Sb07g006210
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt C5YIV9
Pfam PF00847
Panther DB PTHR31677 PTHR31677:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G12980 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g52090.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044109 , Zm00025a011638 , Zm00025a029907 , Zm00025a055961 , Zm00025a049099 , Zm00025a037864 , Zm00025a030489
Brachypodium KQK05592 , KQJ94687
Barley HORVU1Hr1G067160.1 , HORVU2Hr1G071470.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G482600 "TIFY 11b(Ortholog in rice:Hakata et al., 2012)"(PubMedID : 31659847)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
2 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
3 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
4 Sobic.001G406300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
5 Sobic.004G297600 triacylglycerol lipase like protein, putative, expressed -
6 Sobic.010G163150 - -
7 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
8 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
10 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
12 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G077200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
16 Sobic.002G341900 - -
17 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
19 Sobic.005G165900 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -


Gene co-expression network
sample Sobic007G077300 Sobic007G077300 Sobic001G482600 Sobic001G482600 Sobic007G077300--Sobic001G482600 Sobic006G257700 Sobic006G257700 Sobic007G077300--Sobic006G257700 Sobic001G064900 Sobic001G064900 Sobic007G077300--Sobic001G064900 Sobic001G406300 Sobic001G406300 Sobic007G077300--Sobic001G406300 Sobic004G297600 Sobic004G297600 Sobic007G077300--Sobic004G297600 Sobic010G163150 Sobic010G163150 Sobic007G077300--Sobic010G163150 Sobic006G273800 Sobic006G273800 Sobic007G077300--Sobic006G273800 Sobic001G095700 Sobic001G095700 Sobic007G077300--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic007G077300--Sobic010G102000 Sobic001G482600--Sobic007G077300 Sobic001G482600--Sobic006G257700 Sobic001G482600--Sobic010G102000 Sobic010G209100 Sobic010G209100 Sobic001G482600--Sobic010G209100 Sobic007G077200 Sobic007G077200 Sobic001G482600--Sobic007G077200 Sobic009G217500 Sobic009G217500 Sobic001G482600--Sobic009G217500 Sobic001G482600--Sobic006G273800 Sobic001G482600--Sobic001G406300 Sobic007G077100 Sobic007G077100 Sobic001G482600--Sobic007G077100 Sobic006G257700--Sobic001G064900 Sobic009G010400 Sobic009G010400 Sobic006G257700--Sobic009G010400 Sobic006G257700--Sobic010G102000 Sobic006G257700--Sobic004G297600 Sobic006G257700--Sobic001G095700 Sobic001G287600 Sobic001G287600 Sobic006G257700--Sobic001G287600 Sobic010G023200 Sobic010G023200 Sobic006G257700--Sobic010G023200 Sobic006G257700--Sobic007G077300 Sobic006G259000 Sobic006G259000 Sobic006G257700--Sobic006G259000 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic003G341100 Sobic003G341100 Sobic001G064900--Sobic003G341100 Sobic010G023300 Sobic010G023300 Sobic001G406300--Sobic010G023300 Sobic002G294600 Sobic002G294600 Sobic001G406300--Sobic002G294600 Sobic004G065900 Sobic004G065900 Sobic001G406300--Sobic004G065900 Sobic002G185200 Sobic002G185200 Sobic001G406300--Sobic002G185200 Sobic007G051800 Sobic007G051800 Sobic001G406300--Sobic007G051800 Sobic001G406300--Sobic001G095700 Sobic009G157100 Sobic009G157100 Sobic001G406300--Sobic009G157100 Sobic007G143400 Sobic007G143400 Sobic001G406300--Sobic007G143400 Sobic006G210300 Sobic006G210300 Sobic001G406300--Sobic006G210300 Sobic004G297600--Sobic006G257700 Sobic004G297600--Sobic010G102000 Sobic004G297600--Sobic009G010400 Sobic001G195100 Sobic001G195100 Sobic004G297600--Sobic001G195100 Sobic001G314800 Sobic001G314800 Sobic004G297600--Sobic001G314800 Sobic010G105300 Sobic010G105300 Sobic004G297600--Sobic010G105300 Sobic001G489500 Sobic001G489500 Sobic004G297600--Sobic001G489500 Sobic002G341900 Sobic002G341900 Sobic004G297600--Sobic002G341900 Sobic004G297600--Sobic001G064900 Sobic001G146400 Sobic001G146400 Sobic010G163150--Sobic001G146400 Sobic002G386200 Sobic002G386200 Sobic010G163150--Sobic002G386200 Sobic010G018300 Sobic010G018300 Sobic010G163150--Sobic010G018300 Sobic009G067400 Sobic009G067400 Sobic010G163150--Sobic009G067400 Sobic010G163150--Sobic004G297600 Sobic009G214300 Sobic009G214300 Sobic010G163150--Sobic009G214300 Sobic010G210600 Sobic010G210600 Sobic010G163150--Sobic010G210600 Sobic004G181300 Sobic004G181300 Sobic010G163150--Sobic004G181300 Sobic003G258700 Sobic003G258700 Sobic010G163150--Sobic003G258700 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic003G416500 Sobic003G416500 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic001G035000 Sobic001G035000 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic002G367900 Sobic002G367900 Sobic001G095700--Sobic002G367900 Sobic007G145700 Sobic007G145700 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800
Octagon: transcription factors


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