Gene annotation
Transcriptome id Sobic.001G406300.1
Synonym Sb01g038410
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein phosphatase 2C, putative, expressed
UniProt C5WNI6
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF117
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT2G30020 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os03g18150.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a052653 , Zm00025a001993 , Zm00025a039520
Brachypodium -
Barley HORVU4Hr1G056210.1 , HORVU4Hr1G056210.2 , HORVU4Hr1G056210.3 , HORVU4Hr1G056210.4 , HORVU4Hr1G056210.5 , HORVU4Hr1G056210.6 , HORVU4Hr1G056210.7 , HORVU4Hr1G056210.8
Wheat TraesCS4A02G110100 , TraesCS4D02G194900
Populus -


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cDNA sequences
Sobic.001G406300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G023300 expressed protein -
2 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
3 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
4 Sobic.002G185200 VQ domain containing protein, putative, expressed -
5 Sobic.007G051800 down-regulated TF in developmental senescence(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
6 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.009G157100 transferase family protein, putative, expressed -
8 Sobic.007G143400 tetraspanin family protein, putative, expressed -
9 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.002G418900 expressed protein -
11 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
12 Sobic.004G187800 RING-H2 finger protein ATL1O, putative, expressed -
13 Sobic.007G077300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
15 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
16 Sobic.001G482600 "TIFY 11b(Ortholog in rice:Hakata et al., 2012)"(PubMedID : 31659847)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
17 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
19 Sobic.002G341900 - -
20 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -


Gene co-expression network
sample Sobic001G406300 Sobic001G406300 Sobic010G023300 Sobic010G023300 Sobic001G406300--Sobic010G023300 Sobic002G294600 Sobic002G294600 Sobic001G406300--Sobic002G294600 Sobic004G065900 Sobic004G065900 Sobic001G406300--Sobic004G065900 Sobic002G185200 Sobic002G185200 Sobic001G406300--Sobic002G185200 Sobic007G051800 Sobic007G051800 Sobic001G406300--Sobic007G051800 Sobic001G095700 Sobic001G095700 Sobic001G406300--Sobic001G095700 Sobic009G157100 Sobic009G157100 Sobic001G406300--Sobic009G157100 Sobic007G143400 Sobic007G143400 Sobic001G406300--Sobic007G143400 Sobic006G210300 Sobic006G210300 Sobic001G406300--Sobic006G210300 Sobic010G272000 Sobic010G272000 Sobic010G023300--Sobic010G272000 Sobic010G023300--Sobic006G210300 Sobic004G281200 Sobic004G281200 Sobic010G023300--Sobic004G281200 Sobic010G016500 Sobic010G016500 Sobic010G023300--Sobic010G016500 Sobic010G023300--Sobic001G406300 Sobic001G081600 Sobic001G081600 Sobic010G023300--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic010G023300--Sobic002G217100 Sobic010G023300--Sobic007G143400 Sobic004G283300 Sobic004G283300 Sobic010G023300--Sobic004G283300 Sobic007G145700 Sobic007G145700 Sobic002G294600--Sobic007G145700 Sobic001G462800 Sobic001G462800 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G294600--Sobic002G217100 Sobic003G341100 Sobic003G341100 Sobic002G294600--Sobic003G341100 Sobic006G146500 Sobic006G146500 Sobic002G294600--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G294600--Sobic001G118900 Sobic002G207300 Sobic002G207300 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic004G006500 Sobic004G006500 Sobic002G185200--Sobic004G006500 Sobic002G418900 Sobic002G418900 Sobic002G185200--Sobic002G418900 Sobic002G185200--Sobic002G294600 Sobic002G185200--Sobic004G065900 Sobic002G185200--Sobic001G118900 Sobic002G185200--Sobic006G146500 Sobic002G185200--Sobic007G143400 Sobic006G114200 Sobic006G114200 Sobic002G185200--Sobic006G114200 Sobic004G086800 Sobic004G086800 Sobic002G185200--Sobic004G086800 Sobic007G051800--Sobic001G095700 Sobic001G370600 Sobic001G370600 Sobic007G051800--Sobic001G370600 Sobic007G051800--Sobic001G462800 Sobic007G051800--Sobic002G367900 Sobic003G268900 Sobic003G268900 Sobic007G051800--Sobic003G268900 Sobic006G273800 Sobic006G273800 Sobic007G051800--Sobic006G273800 Sobic002G197600 Sobic002G197600 Sobic007G051800--Sobic002G197600 Sobic007G051800--Sobic006G210300 Sobic007G051800--Sobic004G065900 Sobic001G095700--Sobic004G065900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic001G095700--Sobic007G051800 Sobic001G064900 Sobic001G064900 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic009G157100--Sobic004G065900 Sobic009G157100--Sobic001G406300 Sobic009G157100--Sobic001G118900 Sobic002G080100 Sobic002G080100 Sobic009G157100--Sobic002G080100 Sobic009G157100--Sobic001G095700 Sobic009G157100--Sobic010G023300 Sobic009G157100--Sobic002G294600 Sobic009G157100--Sobic001G462800 Sobic009G157100--Sobic007G051800 Sobic002G341900 Sobic002G341900 Sobic007G143400--Sobic002G341900 Sobic007G143400--Sobic001G095700 Sobic007G143400--Sobic002G294600 Sobic007G143400--Sobic002G217100 Sobic007G143400--Sobic001G462800 Sobic007G143400--Sobic003G268900 Sobic007G143400--Sobic002G367900 Sobic007G143400--Sobic006G210300 Sobic007G143400--Sobic004G065900 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic006G210300--Sobic001G462800 Sobic006G210300--Sobic002G367900 Sobic006G210300--Sobic010G016500 Sobic004G244100 Sobic004G244100 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400
Octagon: transcription factors


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