Gene annotation
Transcriptome id Sobic.004G187800.1
Synonym Sb04g023630
Functional annotation RING-H2 finger protein ATL1O, putative, expressed
UniProt C5XVM2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF101
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G33565 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g36330.1 : RING-H2 finger protein ATL1O, putative, expressed
MaizeGDB (Corn) Zm00025a031696 , Zm00025a047333 , Zm00025a014122 , Zm00025a011169
Brachypodium KQJ82893 , KQJ90585
Barley HORVU5Hr1G069990.4 , HORVU5Hr1G069990.1 , HORVU5Hr1G069990.2 , HORVU5Hr1G069990.3 , HORVU7Hr1G107430.1 , HORVU2Hr1G079170.1
Wheat TraesCS2A02G318300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
2 Sobic.002G185200 VQ domain containing protein, putative, expressed -
3 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
4 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
5 Sobic.002G418900 expressed protein -
6 Sobic.004G006500 expressed protein -
7 Sobic.001G406300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
8 Sobic.004G297600 triacylglycerol lipase like protein, putative, expressed -
9 Sobic.002G207300 tetraspanin family protein, putative, expressed -
10 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
11 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
12 Sobic.001G118900 DUF292 domain containing protein, expressed -
13 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
15 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G084000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY3, expressed -
17 Sobic.004G268900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G341900 - -
19 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -


Gene co-expression network
sample Sobic004G187800 Sobic004G187800 Sobic002G294600 Sobic002G294600 Sobic004G187800--Sobic002G294600 Sobic002G185200 Sobic002G185200 Sobic004G187800--Sobic002G185200 Sobic009G010400 Sobic009G010400 Sobic004G187800--Sobic009G010400 Sobic004G065900 Sobic004G065900 Sobic004G187800--Sobic004G065900 Sobic002G418900 Sobic002G418900 Sobic004G187800--Sobic002G418900 Sobic004G006500 Sobic004G006500 Sobic004G187800--Sobic004G006500 Sobic001G406300 Sobic001G406300 Sobic004G187800--Sobic001G406300 Sobic004G297600 Sobic004G297600 Sobic004G187800--Sobic004G297600 Sobic002G207300 Sobic002G207300 Sobic004G187800--Sobic002G207300 Sobic007G145700 Sobic007G145700 Sobic002G294600--Sobic007G145700 Sobic001G462800 Sobic001G462800 Sobic002G294600--Sobic001G462800 Sobic001G095700 Sobic001G095700 Sobic002G294600--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G217100 Sobic002G217100 Sobic002G294600--Sobic002G217100 Sobic003G341100 Sobic003G341100 Sobic002G294600--Sobic003G341100 Sobic006G146500 Sobic006G146500 Sobic002G294600--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G294600--Sobic001G118900 Sobic002G185200--Sobic004G006500 Sobic002G185200--Sobic002G418900 Sobic002G185200--Sobic002G294600 Sobic002G185200--Sobic004G065900 Sobic002G185200--Sobic001G118900 Sobic002G185200--Sobic006G146500 Sobic007G143400 Sobic007G143400 Sobic002G185200--Sobic007G143400 Sobic006G114200 Sobic006G114200 Sobic002G185200--Sobic006G114200 Sobic004G086800 Sobic004G086800 Sobic002G185200--Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic009G010400--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic009G010400--Sobic010G102000 Sobic009G010400--Sobic004G006500 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic004G065900--Sobic009G010400 Sobic002G418900--Sobic004G006500 Sobic002G418900--Sobic002G185200 Sobic002G418900--Sobic001G118900 Sobic002G418900--Sobic004G065900 Sobic009G028500 Sobic009G028500 Sobic002G418900--Sobic009G028500 Sobic002G418900--Sobic002G367900 Sobic002G418900--Sobic002G207300 Sobic002G418900--Sobic007G143400 Sobic001G131200 Sobic001G131200 Sobic002G418900--Sobic001G131200 Sobic004G006500--Sobic002G185200 Sobic004G006500--Sobic002G418900 Sobic004G006500--Sobic001G118900 Sobic004G006500--Sobic009G010400 Sobic004G006500--Sobic009G028500 Sobic004G006500--Sobic004G065900 Sobic002G195800 Sobic002G195800 Sobic004G006500--Sobic002G195800 Sobic004G006500--Sobic006G114200 Sobic004G006500--Sobic004G086800 Sobic010G023300 Sobic010G023300 Sobic001G406300--Sobic010G023300 Sobic001G406300--Sobic002G294600 Sobic001G406300--Sobic004G065900 Sobic001G406300--Sobic002G185200 Sobic007G051800 Sobic007G051800 Sobic001G406300--Sobic007G051800 Sobic001G406300--Sobic001G095700 Sobic009G157100 Sobic009G157100 Sobic001G406300--Sobic009G157100 Sobic001G406300--Sobic007G143400 Sobic006G210300 Sobic006G210300 Sobic001G406300--Sobic006G210300 Sobic004G297600--Sobic006G257700 Sobic004G297600--Sobic010G102000 Sobic004G297600--Sobic009G010400 Sobic001G195100 Sobic001G195100 Sobic004G297600--Sobic001G195100 Sobic001G314800 Sobic001G314800 Sobic004G297600--Sobic001G314800 Sobic010G105300 Sobic010G105300 Sobic004G297600--Sobic010G105300 Sobic001G489500 Sobic001G489500 Sobic004G297600--Sobic001G489500 Sobic002G341900 Sobic002G341900 Sobic004G297600--Sobic002G341900 Sobic004G297600--Sobic001G064900 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic002G207300--Sobic006G146500 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic002G207300--Sobic001G095700
Octagon: transcription factors


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