Gene annotation
| Transcriptome id | Sobic.003G348700.1 |
|---|---|
| Synonym | Sb03g039170 |
| Functional annotation | hydrolase, alpha/beta fold family domain containing protein, expressed |
| UniProt | A0A1W0W0C1 |
| Pfam | PF12695 |
| Panther DB | PTHR11614 PTHR11614:SF109 |
| NCBI CDD | KOG1455; Lysophospholipase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G39420 : alpha/beta-Hydrolases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g62010.1 : hydrolase, alpha/beta fold family domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a052427 |
| Brachypodium | KQK10480 , PNT73154 |
| Barley | HORVU3Hr1G086980.2 , HORVU3Hr1G086980.3 , HORVU3Hr1G086980.1 , HORVU3Hr1G086980.4 , HORVU3Hr1G087020.6 , HORVU3Hr1G087020.7 , HORVU3Hr1G087020.4 , HORVU3Hr1G087020.5 , HORVU3Hr1G087020.2 , HORVU3Hr1G087020.3 , HORVU3Hr1G087020.1 |
| Wheat | TraesCS3A02G355100 , TraesCS3B02G388000 , TraesCS3D02G349100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G012800 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 2 | Sobic.003G146000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed | - |
| 3 | Sobic.006G208100 | maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed | - |
| 4 | Sobic.009G142200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed | - |
| 5 | Sobic.008G058900 | amino acid transporter, putative, expressed | - |
| 6 | Sobic.002G135800 | chlorophyllase-2, chloroplast precursor, putative, expressed | K08099: chlorophyllase |
| 7 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 8 | Sobic.002G188700 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 9 | Sobic.010G182966 | - | K15639: CYP734A1, PHYB activation tagged suppressor 1 |
| 10 | Sobic.008G144500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed | - |
| 11 | Sobic.003G424500 | Putative uncharacterized protein(PubMedID : 24906815)@expressed protein | - |
| 12 | Sobic.010G201200 | expressed protein | - |
| 13 | Sobic.004G300300 | Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed | - |
| 14 | Sobic.001G027800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsMan05 - Endo-Beta-Mannanase, expressed | K19355: mannan endo-1,4-beta-mannosidase |
| 15 | Sobic.010G238400 | cis-zeatin O-glucosyltransferase, putative, expressed | K13495: cis-zeatin O-glucosyltransferase |
| 16 | Sobic.006G272700 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 17 | Sobic.010G105500 | - | - |
| 18 | Sobic.009G167000 | expressed protein | - |
| 19 | Sobic.005G215766 | - | - |
| 20 | Sobic.004G232201 | - | - |
Gene co-expression network
Octagon: transcription factors
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