Gene annotation
Transcriptome id Sobic.001G054400.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QHF8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g58500.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK12675
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
2 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
4 Sobic.004G195300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
7 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
8 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.008G111100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
11 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
12 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
13 Sobic.010G069200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
14 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
15 Sobic.002G195900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
17 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
18 Sobic.003G087300 nuclease PA3, putative, expressed -
19 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
20 Sobic.004G333150 - -


Gene co-expression network
sample Sobic001G054400 Sobic001G054400 Sobic009G155200 Sobic009G155200 Sobic001G054400--Sobic009G155200 Sobic001G119000 Sobic001G119000 Sobic001G054400--Sobic001G119000 Sobic003G423500 Sobic003G423500 Sobic001G054400--Sobic003G423500 Sobic004G195300 Sobic004G195300 Sobic001G054400--Sobic004G195300 Sobic009G177800 Sobic009G177800 Sobic001G054400--Sobic009G177800 Sobic007G171000 Sobic007G171000 Sobic001G054400--Sobic007G171000 Sobic002G359300 Sobic002G359300 Sobic001G054400--Sobic002G359300 Sobic003G035700 Sobic003G035700 Sobic001G054400--Sobic003G035700 Sobic001G119100 Sobic001G119100 Sobic001G054400--Sobic001G119100 Sobic009G155200--Sobic007G171000 Sobic009G155200--Sobic001G119000 Sobic009G155200--Sobic001G054400 Sobic009G155200--Sobic002G359300 Sobic008G111100 Sobic008G111100 Sobic009G155200--Sobic008G111100 Sobic009G155200--Sobic009G177800 Sobic005G103300 Sobic005G103300 Sobic009G155200--Sobic005G103300 Sobic009G036700 Sobic009G036700 Sobic009G155200--Sobic009G036700 Sobic001G040200 Sobic001G040200 Sobic009G155200--Sobic001G040200 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic002G245100 Sobic002G245100 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G389000 Sobic001G389000 Sobic001G119000--Sobic001G389000 Sobic003G423500--Sobic003G035700 Sobic010G069200 Sobic010G069200 Sobic003G423500--Sobic010G069200 Sobic003G423500--Sobic001G119000 Sobic003G423500--Sobic001G054400 Sobic003G423500--Sobic007G171000 Sobic010G078600 Sobic010G078600 Sobic003G423500--Sobic010G078600 Sobic003G423500--Sobic004G195300 Sobic004G147900 Sobic004G147900 Sobic003G423500--Sobic004G147900 Sobic003G423500--Sobic009G155200 Sobic006G089300 Sobic006G089300 Sobic004G195300--Sobic006G089300 Sobic002G202600 Sobic002G202600 Sobic004G195300--Sobic002G202600 Sobic004G195300--Sobic002G359300 Sobic010G200700 Sobic010G200700 Sobic004G195300--Sobic010G200700 Sobic004G195300--Sobic010G078600 Sobic004G195300--Sobic003G035700 Sobic004G195300--Sobic001G119000 Sobic009G066800 Sobic009G066800 Sobic004G195300--Sobic009G066800 Sobic004G195300--Sobic001G054400 Sobic009G177800--Sobic002G183200 Sobic004G307000 Sobic004G307000 Sobic009G177800--Sobic004G307000 Sobic009G177800--Sobic008G111100 Sobic009G177800--Sobic001G119100 Sobic002G195900 Sobic002G195900 Sobic009G177800--Sobic002G195900 Sobic009G177800--Sobic001G119000 Sobic006G173900 Sobic006G173900 Sobic009G177800--Sobic006G173900 Sobic004G167800 Sobic004G167800 Sobic009G177800--Sobic004G167800 Sobic009G177800--Sobic007G171000 Sobic007G171000--Sobic009G155200 Sobic007G171000--Sobic002G195900 Sobic003G429300 Sobic003G429300 Sobic007G171000--Sobic003G429300 Sobic007G171000--Sobic001G119000 Sobic007G171000--Sobic009G177800 Sobic007G171000--Sobic002G359300 Sobic002G046100 Sobic002G046100 Sobic007G171000--Sobic002G046100 Sobic007G171000--Sobic008G111100 Sobic007G137700 Sobic007G137700 Sobic007G171000--Sobic007G137700 Sobic002G359300--Sobic001G040200 Sobic006G179500 Sobic006G179500 Sobic002G359300--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic002G359300--Sobic002G140300 Sobic006G183400 Sobic006G183400 Sobic002G359300--Sobic006G183400 Sobic002G359300--Sobic002G195900 Sobic003G430400 Sobic003G430400 Sobic002G359300--Sobic003G430400 Sobic003G264500 Sobic003G264500 Sobic002G359300--Sobic003G264500 Sobic002G359300--Sobic006G089300 Sobic009G183300 Sobic009G183300 Sobic002G359300--Sobic009G183300 Sobic003G035700--Sobic003G423500 Sobic003G035700--Sobic004G147900 Sobic003G035700--Sobic010G200700 Sobic003G035700--Sobic004G195300 Sobic004G297200 Sobic004G297200 Sobic003G035700--Sobic004G297200 Sobic003G035700--Sobic010G078600 Sobic001G290400 Sobic001G290400 Sobic003G035700--Sobic001G290400 Sobic003G012800 Sobic003G012800 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic001G119100--Sobic001G119000 Sobic001G119100--Sobic002G183200 Sobic003G227300 Sobic003G227300 Sobic001G119100--Sobic003G227300 Sobic007G145600 Sobic007G145600 Sobic001G119100--Sobic007G145600 Sobic001G119100--Sobic005G091500 Sobic001G119100--Sobic004G189400 Sobic010G084400 Sobic010G084400 Sobic001G119100--Sobic010G084400 Sobic007G061300 Sobic007G061300 Sobic001G119100--Sobic007G061300 Sobic001G339700 Sobic001G339700 Sobic001G119100--Sobic001G339700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.