Gene annotation
Transcriptome id Sobic.004G195300.1
Synonym Sb04g024230
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XWC1
Pfam -
Panther DB PTHR22814 PTHR22814:SF90
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05030 : Copper transport protein family
RAP-DB (Rice) LOC_Os02g37180.1 : expressed protein
MaizeGDB (Corn) Zm00025a021381
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
2 Sobic.002G202600 joka8, putative, expressed -
3 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
4 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.010G078600 - -
6 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
7 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.009G066800 - -
9 Sobic.001G054400 expressed protein -
10 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
11 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
12 Sobic.003G012800 AP2 domain containing protein, expressed -
13 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
14 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
15 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
16 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
17 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
18 Sobic.003G264500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.003G373000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.002G195900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G195300 Sobic004G195300 Sobic006G089300 Sobic006G089300 Sobic004G195300--Sobic006G089300 Sobic002G202600 Sobic002G202600 Sobic004G195300--Sobic002G202600 Sobic002G359300 Sobic002G359300 Sobic004G195300--Sobic002G359300 Sobic010G200700 Sobic010G200700 Sobic004G195300--Sobic010G200700 Sobic010G078600 Sobic010G078600 Sobic004G195300--Sobic010G078600 Sobic003G035700 Sobic003G035700 Sobic004G195300--Sobic003G035700 Sobic001G119000 Sobic001G119000 Sobic004G195300--Sobic001G119000 Sobic009G066800 Sobic009G066800 Sobic004G195300--Sobic009G066800 Sobic001G054400 Sobic001G054400 Sobic004G195300--Sobic001G054400 Sobic001G040200 Sobic001G040200 Sobic006G089300--Sobic001G040200 Sobic006G089300--Sobic002G359300 Sobic006G179500 Sobic006G179500 Sobic006G089300--Sobic006G179500 Sobic006G228300 Sobic006G228300 Sobic006G089300--Sobic006G228300 Sobic001G538866 Sobic001G538866 Sobic006G089300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G089300--Sobic002G140300 Sobic006G089300--Sobic010G200700 Sobic002G036100 Sobic002G036100 Sobic006G089300--Sobic002G036100 Sobic007G151100 Sobic007G151100 Sobic006G089300--Sobic007G151100 Sobic002G245100 Sobic002G245100 Sobic002G202600--Sobic002G245100 Sobic002G202600--Sobic001G119000 Sobic003G037800 Sobic003G037800 Sobic002G202600--Sobic003G037800 Sobic001G389000 Sobic001G389000 Sobic002G202600--Sobic001G389000 Sobic003G430400 Sobic003G430400 Sobic002G202600--Sobic003G430400 Sobic003G158500 Sobic003G158500 Sobic002G202600--Sobic003G158500 Sobic003G429000 Sobic003G429000 Sobic002G202600--Sobic003G429000 Sobic009G159400 Sobic009G159400 Sobic002G202600--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic002G202600--Sobic005G018700 Sobic002G359300--Sobic001G040200 Sobic002G359300--Sobic006G179500 Sobic002G359300--Sobic002G140300 Sobic006G183400 Sobic006G183400 Sobic002G359300--Sobic006G183400 Sobic002G195900 Sobic002G195900 Sobic002G359300--Sobic002G195900 Sobic002G359300--Sobic003G430400 Sobic003G264500 Sobic003G264500 Sobic002G359300--Sobic003G264500 Sobic002G359300--Sobic006G089300 Sobic009G183300 Sobic009G183300 Sobic002G359300--Sobic009G183300 Sobic004G297200 Sobic004G297200 Sobic010G200700--Sobic004G297200 Sobic010G200700--Sobic006G089300 Sobic003G012800 Sobic003G012800 Sobic010G200700--Sobic003G012800 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic010G200700--Sobic009G066800 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic006G026700 Sobic006G026700 Sobic010G078600--Sobic006G026700 Sobic010G036800 Sobic010G036800 Sobic010G078600--Sobic010G036800 Sobic010G078600--Sobic004G195300 Sobic010G078600--Sobic006G089300 Sobic003G423500 Sobic003G423500 Sobic010G078600--Sobic003G423500 Sobic010G078600--Sobic002G036100 Sobic010G078600--Sobic003G158500 Sobic010G078600--Sobic007G151100 Sobic010G078600--Sobic003G035700 Sobic003G035700--Sobic003G423500 Sobic004G147900 Sobic004G147900 Sobic003G035700--Sobic004G147900 Sobic003G035700--Sobic010G200700 Sobic003G035700--Sobic004G195300 Sobic003G035700--Sobic004G297200 Sobic003G035700--Sobic010G078600 Sobic001G290400 Sobic001G290400 Sobic003G035700--Sobic001G290400 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic001G119100 Sobic001G119100 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G119000--Sobic001G389000 Sobic002G036150 Sobic002G036150 Sobic009G066800--Sobic002G036150 Sobic005G010200 Sobic005G010200 Sobic009G066800--Sobic005G010200 Sobic009G066800--Sobic010G200700 Sobic009G247300 Sobic009G247300 Sobic009G066800--Sobic009G247300 Sobic009G066800--Sobic002G036100 Sobic009G111200 Sobic009G111200 Sobic009G066800--Sobic009G111200 Sobic009G066800--Sobic006G089300 Sobic010G041700 Sobic010G041700 Sobic009G066800--Sobic010G041700 Sobic009G066800--Sobic002G359300 Sobic009G155200 Sobic009G155200 Sobic001G054400--Sobic009G155200 Sobic001G054400--Sobic001G119000 Sobic001G054400--Sobic003G423500 Sobic001G054400--Sobic004G195300 Sobic009G177800 Sobic009G177800 Sobic001G054400--Sobic009G177800 Sobic007G171000 Sobic007G171000 Sobic001G054400--Sobic007G171000 Sobic001G054400--Sobic002G359300 Sobic001G054400--Sobic003G035700 Sobic001G054400--Sobic001G119100
Octagon: transcription factors


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