Gene annotation
Transcriptome id Sobic.010G078600.1
Synonym
Functional annotation -
UniProt A0A194YHY1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G026700 expressed protein -
2 Sobic.010G036800 expressed protein -
3 Sobic.004G195300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
5 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
6 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
7 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
8 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
9 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
10 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
11 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
12 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
14 Sobic.001G538866 - -
15 Sobic.009G247300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY11, expressed -
16 Sobic.002G202600 joka8, putative, expressed -
17 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
18 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
19 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
20 Sobic.003G092900 expressed protein -


Gene co-expression network
sample Sobic010G078600 Sobic010G078600 Sobic006G026700 Sobic006G026700 Sobic010G078600--Sobic006G026700 Sobic010G036800 Sobic010G036800 Sobic010G078600--Sobic010G036800 Sobic004G195300 Sobic004G195300 Sobic010G078600--Sobic004G195300 Sobic006G089300 Sobic006G089300 Sobic010G078600--Sobic006G089300 Sobic003G423500 Sobic003G423500 Sobic010G078600--Sobic003G423500 Sobic002G036100 Sobic002G036100 Sobic010G078600--Sobic002G036100 Sobic003G158500 Sobic003G158500 Sobic010G078600--Sobic003G158500 Sobic007G151100 Sobic007G151100 Sobic010G078600--Sobic007G151100 Sobic003G035700 Sobic003G035700 Sobic010G078600--Sobic003G035700 Sobic001G513700 Sobic001G513700 Sobic006G026700--Sobic001G513700 Sobic006G026700--Sobic010G078600 Sobic008G036000 Sobic008G036000 Sobic006G026700--Sobic008G036000 Sobic006G026700--Sobic002G036100 Sobic001G077400 Sobic001G077400 Sobic006G026700--Sobic001G077400 Sobic001G209800 Sobic001G209800 Sobic006G026700--Sobic001G209800 Sobic006G228300 Sobic006G228300 Sobic006G026700--Sobic006G228300 Sobic004G280900 Sobic004G280900 Sobic006G026700--Sobic004G280900 Sobic005G111400 Sobic005G111400 Sobic006G026700--Sobic005G111400 Sobic006G101100 Sobic006G101100 Sobic010G036800--Sobic006G101100 Sobic009G069700 Sobic009G069700 Sobic010G036800--Sobic009G069700 Sobic001G247300 Sobic001G247300 Sobic010G036800--Sobic001G247300 Sobic010G036800--Sobic003G158500 Sobic010G259300 Sobic010G259300 Sobic010G036800--Sobic010G259300 Sobic006G240600 Sobic006G240600 Sobic010G036800--Sobic006G240600 Sobic010G036800--Sobic010G078600 Sobic003G092900 Sobic003G092900 Sobic010G036800--Sobic003G092900 Sobic003G313100 Sobic003G313100 Sobic010G036800--Sobic003G313100 Sobic004G195300--Sobic006G089300 Sobic002G202600 Sobic002G202600 Sobic004G195300--Sobic002G202600 Sobic002G359300 Sobic002G359300 Sobic004G195300--Sobic002G359300 Sobic010G200700 Sobic010G200700 Sobic004G195300--Sobic010G200700 Sobic004G195300--Sobic010G078600 Sobic004G195300--Sobic003G035700 Sobic001G119000 Sobic001G119000 Sobic004G195300--Sobic001G119000 Sobic009G066800 Sobic009G066800 Sobic004G195300--Sobic009G066800 Sobic001G054400 Sobic001G054400 Sobic004G195300--Sobic001G054400 Sobic001G040200 Sobic001G040200 Sobic006G089300--Sobic001G040200 Sobic006G089300--Sobic002G359300 Sobic006G179500 Sobic006G179500 Sobic006G089300--Sobic006G179500 Sobic006G089300--Sobic006G228300 Sobic001G538866 Sobic001G538866 Sobic006G089300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G089300--Sobic002G140300 Sobic006G089300--Sobic010G200700 Sobic006G089300--Sobic002G036100 Sobic006G089300--Sobic007G151100 Sobic003G423500--Sobic003G035700 Sobic010G069200 Sobic010G069200 Sobic003G423500--Sobic010G069200 Sobic003G423500--Sobic001G119000 Sobic003G423500--Sobic001G054400 Sobic007G171000 Sobic007G171000 Sobic003G423500--Sobic007G171000 Sobic003G423500--Sobic010G078600 Sobic003G423500--Sobic004G195300 Sobic004G147900 Sobic004G147900 Sobic003G423500--Sobic004G147900 Sobic009G155200 Sobic009G155200 Sobic003G423500--Sobic009G155200 Sobic002G036100--Sobic001G077400 Sobic002G036100--Sobic004G280900 Sobic002G036100--Sobic001G538866 Sobic006G165100 Sobic006G165100 Sobic002G036100--Sobic006G165100 Sobic002G036100--Sobic002G140300 Sobic001G259600 Sobic001G259600 Sobic002G036100--Sobic001G259600 Sobic003G313800 Sobic003G313800 Sobic002G036100--Sobic003G313800 Sobic002G036150 Sobic002G036150 Sobic002G036100--Sobic002G036150 Sobic002G036100--Sobic001G040200 Sobic003G158500--Sobic001G040200 Sobic003G158500--Sobic002G140300 Sobic002G245100 Sobic002G245100 Sobic003G158500--Sobic002G245100 Sobic003G158500--Sobic010G259300 Sobic001G407800 Sobic001G407800 Sobic003G158500--Sobic001G407800 Sobic002G356101 Sobic002G356101 Sobic003G158500--Sobic002G356101 Sobic003G158500--Sobic007G151100 Sobic003G430400 Sobic003G430400 Sobic003G158500--Sobic003G430400 Sobic003G158500--Sobic001G538866 Sobic001G516600 Sobic001G516600 Sobic007G151100--Sobic001G516600 Sobic007G151100--Sobic003G158500 Sobic007G151100--Sobic002G356101 Sobic007G151100--Sobic001G538866 Sobic005G028700 Sobic005G028700 Sobic007G151100--Sobic005G028700 Sobic007G151100--Sobic002G140300 Sobic007G151100--Sobic002G245100 Sobic007G151100--Sobic001G513700 Sobic007G151100--Sobic002G036100 Sobic003G035700--Sobic003G423500 Sobic003G035700--Sobic004G147900 Sobic003G035700--Sobic010G200700 Sobic003G035700--Sobic004G195300 Sobic004G297200 Sobic004G297200 Sobic003G035700--Sobic004G297200 Sobic003G035700--Sobic010G078600 Sobic001G290400 Sobic001G290400 Sobic003G035700--Sobic001G290400 Sobic003G012800 Sobic003G012800 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700
Octagon: transcription factors


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