Gene annotation
Transcriptome id Sobic.005G028600.1,Sobic.005G028600.2
Synonym Sb05g002400
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5RGW8 , A0A1Z5RGH8
Pfam PF13639
Panther DB PTHR12389
NCBI CDD KOG0803; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G58410 : HEAT/U-box domain-containing protein
RAP-DB (Rice) LOC_Os01g74610.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013099
Brachypodium KQK11843
Barley HORVU5Hr1G123700.4 , HORVU5Hr1G123700.5 , HORVU5Hr1G123700.6 , HORVU5Hr1G123700.7 , HORVU5Hr1G123700.1 , HORVU5Hr1G123700.2 , HORVU5Hr1G123700.3 , HORVU5Hr1G123700.8 , HORVU5Hr1G123700.9 , HORVU5Hr1G123700.16 , HORVU5Hr1G123700.17 , HORVU5Hr1G123700.14 , HORVU5Hr1G123700.15 , HORVU5Hr1G123700.12 , HORVU5Hr1G123700.13 , HORVU5Hr1G123700.10 , HORVU5Hr1G123700.11
Wheat TraesCS5B02G555800 , TraesCS5D02G553700 , TraesCS5D02G553700 , TraesCS4A02G322600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
2 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
3 Sobic.002G397500 SAC3/GANP family protein, expressed -
4 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
5 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
6 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
7 Sobic.001G280900 expressed protein -
8 Sobic.007G062800 SET domain containing protein, expressed -
9 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
10 Sobic.001G191700 expressed protein -
11 Sobic.001G219900 expressed protein -
12 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
13 Sobic.001G540400 expressed protein -
14 Sobic.010G002100 expressed protein K15164: mediator of RNA polymerase II transcription subunit 13
15 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
16 Sobic.006G279200 expressed protein K11789: DCAF1, DDB1- and CUL4-associated factor 1
17 Sobic.008G087866 - -
18 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
20 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26


Gene co-expression network
sample Sobic005G028600 Sobic005G028600 Sobic001G058700 Sobic001G058700 Sobic005G028600--Sobic001G058700 Sobic003G247300 Sobic003G247300 Sobic005G028600--Sobic003G247300 Sobic002G397500 Sobic002G397500 Sobic005G028600--Sobic002G397500 Sobic001G299700 Sobic001G299700 Sobic005G028600--Sobic001G299700 Sobic003G408600 Sobic003G408600 Sobic005G028600--Sobic003G408600 Sobic005G001000 Sobic005G001000 Sobic005G028600--Sobic005G001000 Sobic001G280900 Sobic001G280900 Sobic005G028600--Sobic001G280900 Sobic007G062800 Sobic007G062800 Sobic005G028600--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic005G028600--Sobic005G008800 Sobic001G058700--Sobic003G408600 Sobic007G172400 Sobic007G172400 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic001G050200 Sobic001G050200 Sobic003G247300--Sobic001G050200 Sobic003G313500 Sobic003G313500 Sobic003G247300--Sobic003G313500 Sobic010G139600 Sobic010G139600 Sobic003G247300--Sobic010G139600 Sobic003G247300--Sobic005G001000 Sobic003G247300--Sobic005G028600 Sobic002G008900 Sobic002G008900 Sobic003G247300--Sobic002G008900 Sobic003G205200 Sobic003G205200 Sobic003G247300--Sobic003G205200 Sobic004G269200 Sobic004G269200 Sobic003G247300--Sobic004G269200 Sobic009G191000 Sobic009G191000 Sobic003G247300--Sobic009G191000 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic001G542400 Sobic001G542400 Sobic001G299700--Sobic001G542400 Sobic003G186000 Sobic003G186000 Sobic001G299700--Sobic003G186000 Sobic010G105200 Sobic010G105200 Sobic001G299700--Sobic010G105200 Sobic001G191700 Sobic001G191700 Sobic001G299700--Sobic001G191700 Sobic001G299700--Sobic009G109200 Sobic001G299700--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G299700--Sobic008G001200 Sobic001G299700--Sobic007G062800 Sobic006G040500 Sobic006G040500 Sobic001G299700--Sobic006G040500 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic001G194200 Sobic001G194200 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic001G280900--Sobic001G540400 Sobic001G280900--Sobic005G112300 Sobic001G280900--Sobic002G397500 Sobic001G280900--Sobic003G408600 Sobic001G280900--Sobic009G109200 Sobic001G280900--Sobic005G008800 Sobic001G280900--Sobic007G062800 Sobic001G280900--Sobic001G058700 Sobic001G280900--Sobic001G050600 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200
Octagon: transcription factors


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