Gene annotation
Transcriptome id Sobic.002G427100.1,Sobic.002G427100.2
Synonym Sb02g043750
Functional annotation TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed
UniProt A0A1W0W871 , A0A1B6QGF8
Pfam PF00628 PF12738 PF00533 PF00628 PF00533 PF12738
Panther DB PTHR13561 PTHR13561:SF5
NCBI CDD -
KEGG Orthology K10728; topoisomerase (DNA) II binding protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G02110 : transcription coactivators
RAP-DB (Rice) LOC_Os07g49010.1 : TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed
MaizeGDB (Corn) Zm00025a049238
Brachypodium KQK14522 , PNT74535
Barley HORVU2Hr1G015760.7 , HORVU2Hr1G015760.6 , HORVU2Hr1G015760.5 , HORVU2Hr1G015760.4 , HORVU2Hr1G015760.3 , HORVU2Hr1G015760.2 , HORVU2Hr1G015760.1 , HORVU2Hr1G015760.9 , HORVU2Hr1G015760.8 , HORVU2Hr1G015760.12 , HORVU2Hr1G015760.16 , HORVU2Hr1G015760.15 , HORVU2Hr1G015760.14 , HORVU2Hr1G015760.13 , HORVU2Hr1G015760.11 , HORVU2Hr1G015760.10
Wheat TraesCS2A02G094800 , TraesCS2B02G109900 , TraesCS2D02G093300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G458900 targeting protein-related, putative, expressed -
2 Sobic.007G097000 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
3 Sobic.005G056800 FHA domain containing protein, putative, expressed -
4 Sobic.001G534000 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
5 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
6 Sobic.003G384100 ZIP4/SPO22, putative, expressed -
7 Sobic.010G237200 DUF292 domain containing protein, expressed -
8 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
9 Sobic.003G008700 MYB family transcription factor, putative, expressed -
10 Sobic.001G077200 BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
11 Sobic.001G540200 PAIR1, putative, expressed -
12 Sobic.001G151200 anthranilate phosphoribosyltransferase, putative, expressed -
13 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
14 Sobic.002G293800 expressed protein -
15 Sobic.005G164900 expressed protein -
16 Sobic.001G284900 expressed protein -
17 Sobic.004G035300 - K10901: BLM, RECQL3, bloom syndrome protein
18 Sobic.002G358100 expressed protein -
19 Sobic.004G047800 growth regulator related protein, putative, expressed -
20 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2


Gene co-expression network
sample Sobic002G427100 Sobic002G427100 Sobic001G458900 Sobic001G458900 Sobic002G427100--Sobic001G458900 Sobic007G097000 Sobic007G097000 Sobic002G427100--Sobic007G097000 Sobic005G056800 Sobic005G056800 Sobic002G427100--Sobic005G056800 Sobic001G534000 Sobic001G534000 Sobic002G427100--Sobic001G534000 Sobic001G109700 Sobic001G109700 Sobic002G427100--Sobic001G109700 Sobic003G384100 Sobic003G384100 Sobic002G427100--Sobic003G384100 Sobic010G237200 Sobic010G237200 Sobic002G427100--Sobic010G237200 Sobic009G025400 Sobic009G025400 Sobic002G427100--Sobic009G025400 Sobic003G008700 Sobic003G008700 Sobic002G427100--Sobic003G008700 Sobic002G279300 Sobic002G279300 Sobic001G458900--Sobic002G279300 Sobic003G047200 Sobic003G047200 Sobic001G458900--Sobic003G047200 Sobic002G293800 Sobic002G293800 Sobic001G458900--Sobic002G293800 Sobic010G234800 Sobic010G234800 Sobic001G458900--Sobic010G234800 Sobic004G115600 Sobic004G115600 Sobic001G458900--Sobic004G115600 Sobic001G098900 Sobic001G098900 Sobic001G458900--Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic001G458900--Sobic010G215300 Sobic001G284900 Sobic001G284900 Sobic001G458900--Sobic001G284900 Sobic001G077200 Sobic001G077200 Sobic001G458900--Sobic001G077200 Sobic007G097000--Sobic003G008700 Sobic007G097000--Sobic001G109700 Sobic005G110535 Sobic005G110535 Sobic007G097000--Sobic005G110535 Sobic002G290000 Sobic002G290000 Sobic007G097000--Sobic002G290000 Sobic002G190000 Sobic002G190000 Sobic007G097000--Sobic002G190000 Sobic007G007800 Sobic007G007800 Sobic007G097000--Sobic007G007800 Sobic001G377700 Sobic001G377700 Sobic007G097000--Sobic001G377700 Sobic009G222400 Sobic009G222400 Sobic007G097000--Sobic009G222400 Sobic003G055600 Sobic003G055600 Sobic007G097000--Sobic003G055600 Sobic005G056800--Sobic001G284900 Sobic005G056800--Sobic009G025400 Sobic004G271300 Sobic004G271300 Sobic005G056800--Sobic004G271300 Sobic005G056800--Sobic003G047200 Sobic003G414400 Sobic003G414400 Sobic005G056800--Sobic003G414400 Sobic005G056800--Sobic010G215300 Sobic006G112800 Sobic006G112800 Sobic005G056800--Sobic006G112800 Sobic001G540900 Sobic001G540900 Sobic005G056800--Sobic001G540900 Sobic007G130000 Sobic007G130000 Sobic005G056800--Sobic007G130000 Sobic001G430200 Sobic001G430200 Sobic001G534000--Sobic001G430200 Sobic002G269700 Sobic002G269700 Sobic001G534000--Sobic002G269700 Sobic006G196700 Sobic006G196700 Sobic001G534000--Sobic006G196700 Sobic002G152400 Sobic002G152400 Sobic001G534000--Sobic002G152400 Sobic006G281300 Sobic006G281300 Sobic001G534000--Sobic006G281300 Sobic007G218550 Sobic007G218550 Sobic001G534000--Sobic007G218550 Sobic002G213050 Sobic002G213050 Sobic001G534000--Sobic002G213050 Sobic004G055400 Sobic004G055400 Sobic001G534000--Sobic004G055400 Sobic006G018500 Sobic006G018500 Sobic001G534000--Sobic006G018500 Sobic003G043900 Sobic003G043900 Sobic001G109700--Sobic003G043900 Sobic007G125300 Sobic007G125300 Sobic001G109700--Sobic007G125300 Sobic001G109700--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic001G109700--Sobic008G148000 Sobic002G296000 Sobic002G296000 Sobic001G109700--Sobic002G296000 Sobic005G000500 Sobic005G000500 Sobic001G109700--Sobic005G000500 Sobic001G304800 Sobic001G304800 Sobic001G109700--Sobic001G304800 Sobic004G156200 Sobic004G156200 Sobic001G109700--Sobic004G156200 Sobic001G109700--Sobic002G290000 Sobic002G074500 Sobic002G074500 Sobic003G384100--Sobic002G074500 Sobic003G384100--Sobic010G237200 Sobic003G063500 Sobic003G063500 Sobic003G384100--Sobic003G063500 Sobic007G143900 Sobic007G143900 Sobic003G384100--Sobic007G143900 Sobic002G239800 Sobic002G239800 Sobic003G384100--Sobic002G239800 Sobic002G095800 Sobic002G095800 Sobic003G384100--Sobic002G095800 Sobic007G172900 Sobic007G172900 Sobic003G384100--Sobic007G172900 Sobic004G041000 Sobic004G041000 Sobic003G384100--Sobic004G041000 Sobic010G046200 Sobic010G046200 Sobic003G384100--Sobic010G046200 Sobic010G237200--Sobic003G384100 Sobic010G237200--Sobic007G143900 Sobic004G130980 Sobic004G130980 Sobic010G237200--Sobic004G130980 Sobic010G237200--Sobic007G172900 Sobic004G047800 Sobic004G047800 Sobic010G237200--Sobic004G047800 Sobic001G519100 Sobic001G519100 Sobic010G237200--Sobic001G519100 Sobic003G256400 Sobic003G256400 Sobic010G237200--Sobic003G256400 Sobic010G237200--Sobic003G063500 Sobic003G399166 Sobic003G399166 Sobic010G237200--Sobic003G399166 Sobic009G025400--Sobic005G056800 Sobic010G202100 Sobic010G202100 Sobic009G025400--Sobic010G202100 Sobic004G108400 Sobic004G108400 Sobic009G025400--Sobic004G108400 Sobic002G394200 Sobic002G394200 Sobic009G025400--Sobic002G394200 Sobic009G257900 Sobic009G257900 Sobic009G025400--Sobic009G257900 Sobic009G025400--Sobic006G112800 Sobic009G025400--Sobic003G414400 Sobic009G025400--Sobic001G284900 Sobic003G083500 Sobic003G083500 Sobic009G025400--Sobic003G083500 Sobic001G170800 Sobic001G170800 Sobic003G008700--Sobic001G170800 Sobic004G047100 Sobic004G047100 Sobic003G008700--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic003G008700--Sobic009G184200 Sobic003G008700--Sobic005G000500 Sobic003G008700--Sobic005G110535 Sobic010G105400 Sobic010G105400 Sobic003G008700--Sobic010G105400 Sobic003G008700--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic003G008700--Sobic003G444100 Sobic001G398400 Sobic001G398400 Sobic003G008700--Sobic001G398400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.