Gene annotation
Transcriptome id Sobic.009G221600.3
Synonym Sb09g027550
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YV09
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF63
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G73760 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g47670.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044461
Brachypodium PNT70775
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
2 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
3 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
4 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
5 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
6 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
7 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
8 Sobic.008G041400 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
9 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
10 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
11 Sobic.009G161500 - -
12 Sobic.009G075900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
13 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
14 Sobic.004G335600 40S ribosomal protein S30, putative, expressed K02983: RP-S30e, small subunit ribosomal protein S30e
15 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
17 Sobic.009G229000 expressed protein -
18 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
19 Sobic.003G116800 cinnamoyl CoA reductase, putative, expressed K09753: cinnamoyl-CoA reductase
20 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase


Gene co-expression network
sample Sobic009G221600 Sobic009G221600 Sobic004G099500 Sobic004G099500 Sobic009G221600--Sobic004G099500 Sobic007G045700 Sobic007G045700 Sobic009G221600--Sobic007G045700 Sobic004G271400 Sobic004G271400 Sobic009G221600--Sobic004G271400 Sobic002G414600 Sobic002G414600 Sobic009G221600--Sobic002G414600 Sobic002G414700 Sobic002G414700 Sobic009G221600--Sobic002G414700 Sobic006G136800 Sobic006G136800 Sobic009G221600--Sobic006G136800 Sobic010G057100 Sobic010G057100 Sobic009G221600--Sobic010G057100 Sobic008G041400 Sobic008G041400 Sobic009G221600--Sobic008G041400 Sobic001G252300 Sobic001G252300 Sobic009G221600--Sobic001G252300 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic009G015000 Sobic009G015000 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic003G057366 Sobic003G057366 Sobic004G099500--Sobic003G057366 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic009G177700 Sobic009G177700 Sobic007G045700--Sobic009G177700 Sobic007G045700--Sobic004G271400 Sobic003G322400 Sobic003G322400 Sobic007G045700--Sobic003G322400 Sobic005G195301 Sobic005G195301 Sobic007G045700--Sobic005G195301 Sobic003G152600 Sobic003G152600 Sobic007G045700--Sobic003G152600 Sobic009G163800 Sobic009G163800 Sobic007G045700--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic007G045700--Sobic006G260400 Sobic004G331400 Sobic004G331400 Sobic007G045700--Sobic004G331400 Sobic009G050300 Sobic009G050300 Sobic007G045700--Sobic009G050300 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic002G414600--Sobic001G252300 Sobic009G183400 Sobic009G183400 Sobic002G414600--Sobic009G183400 Sobic001G097600 Sobic001G097600 Sobic002G414600--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic002G414600--Sobic002G393000 Sobic001G119400 Sobic001G119400 Sobic002G414600--Sobic001G119400 Sobic009G008900 Sobic009G008900 Sobic002G414600--Sobic009G008900 Sobic005G051200 Sobic005G051200 Sobic002G414600--Sobic005G051200 Sobic006G173900 Sobic006G173900 Sobic002G414600--Sobic006G173900 Sobic006G275200 Sobic006G275200 Sobic002G414600--Sobic006G275200 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic004G046200 Sobic004G046200 Sobic006G136800--Sobic004G046200 Sobic002G081600 Sobic002G081600 Sobic006G136800--Sobic002G081600 Sobic003G436700 Sobic003G436700 Sobic006G136800--Sobic003G436700 Sobic001G295200 Sobic001G295200 Sobic006G136800--Sobic001G295200 Sobic001G036900 Sobic001G036900 Sobic006G136800--Sobic001G036900 Sobic004G205100 Sobic004G205100 Sobic006G136800--Sobic004G205100 Sobic004G340900 Sobic004G340900 Sobic006G136800--Sobic004G340900 Sobic001G389000 Sobic001G389000 Sobic006G136800--Sobic001G389000 Sobic001G500000 Sobic001G500000 Sobic006G136800--Sobic001G500000 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic010G057100--Sobic004G335600 Sobic010G057100--Sobic003G057366 Sobic010G057100--Sobic003G322532 Sobic004G128000 Sobic004G128000 Sobic010G057100--Sobic004G128000 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic005G103300 Sobic005G103300 Sobic008G041400--Sobic005G103300 Sobic008G041400--Sobic002G414600 Sobic008G041400--Sobic001G252300 Sobic007G145600 Sobic007G145600 Sobic008G041400--Sobic007G145600 Sobic001G317200 Sobic001G317200 Sobic008G041400--Sobic001G317200 Sobic003G240600 Sobic003G240600 Sobic008G041400--Sobic003G240600 Sobic008G041400--Sobic005G051200 Sobic001G339700 Sobic001G339700 Sobic008G041400--Sobic001G339700 Sobic008G070350 Sobic008G070350 Sobic008G041400--Sobic008G070350 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600
Octagon: transcription factors


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