Gene annotation
Transcriptome id Sobic.009G105600.1
Synonym Sb09g017140
Functional annotation 60S ribosomal protein L29-2, putative, expressed
UniProt C5YWN1
Pfam PF01779
Panther DB PTHR12884
NCBI CDD KOG3504; 60S ribosomal protein L29
KEGG Orthology K02905; RP-L29e, large subunit ribosomal protein L29e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G06680 : Ribosomal L29e protein family
RAP-DB (Rice) LOC_Os05g28750.1 : 60S ribosomal protein L29-2, putative, expressed
MaizeGDB (Corn) Zm00025a024297
Brachypodium KQJ89280 , KQK06754 , KQK06753 , KQK06752 , KQJ89279
Barley HORVU1Hr1G059570.1 , HORVU1Hr1G059570.3 , HORVU1Hr1G059570.2
Wheat TraesCS1B02G240000 , TraesCS1D02G227300
Populus -


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cDNA sequences
Sobic.009G105600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
2 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
3 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
4 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
5 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
6 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
7 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
8 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
9 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
10 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
11 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
12 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
13 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
14 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
15 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
16 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
17 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
18 Sobic.004G259366 - -
19 Sobic.007G211700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
20 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e


Gene co-expression network
sample Sobic009G105600 Sobic009G105600 Sobic009G105700 Sobic009G105700 Sobic009G105600--Sobic009G105700 Sobic004G331400 Sobic004G331400 Sobic009G105600--Sobic004G331400 Sobic002G175100 Sobic002G175100 Sobic009G105600--Sobic002G175100 Sobic004G271400 Sobic004G271400 Sobic009G105600--Sobic004G271400 Sobic002G414700 Sobic002G414700 Sobic009G105600--Sobic002G414700 Sobic007G184600 Sobic007G184600 Sobic009G105600--Sobic007G184600 Sobic003G322400 Sobic003G322400 Sobic009G105600--Sobic003G322400 Sobic006G047400 Sobic006G047400 Sobic009G105600--Sobic006G047400 Sobic001G374700 Sobic001G374700 Sobic009G105600--Sobic001G374700 Sobic009G105700--Sobic004G331400 Sobic001G376600 Sobic001G376600 Sobic009G105700--Sobic001G376600 Sobic009G105700--Sobic002G175100 Sobic009G105700--Sobic006G047400 Sobic009G105700--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic009G105700--Sobic003G346600 Sobic001G493001 Sobic001G493001 Sobic009G105700--Sobic001G493001 Sobic009G105700--Sobic009G105600 Sobic010G063801 Sobic010G063801 Sobic009G105700--Sobic010G063801 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic009G163800 Sobic009G163800 Sobic004G331400--Sobic009G163800 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic004G331400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic002G175100--Sobic004G331400 Sobic002G175100--Sobic001G374700 Sobic009G215200 Sobic009G215200 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic002G175100--Sobic003G346600 Sobic003G152600 Sobic003G152600 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic004G271400--Sobic007G178600 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic002G200600 Sobic002G200600 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic007G184600--Sobic002G081600 Sobic007G184600--Sobic001G493001 Sobic001G177800 Sobic001G177800 Sobic007G184600--Sobic001G177800 Sobic007G184600--Sobic006G067800 Sobic007G184600--Sobic003G322400 Sobic007G184600--Sobic003G346600 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic003G322400--Sobic002G200600 Sobic003G322400--Sobic007G184600 Sobic009G166500 Sobic009G166500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic006G047400--Sobic001G493001 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001
Octagon: transcription factors


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