Gene annotation
Transcriptome id Sobic.009G172400.2,Sobic.009G172400.1
Synonym Sb09g023300
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A1B6P9A3 , A0A1B6P963
Pfam PF03127 PF00790 PF03127
Panther DB PTHR13856 PTHR13856:SF99
NCBI CDD KOG1087; Cytosolic sorting protein GGA2/TOM1
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT2G38410 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os05g39760.1 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043976 , Zm00025a043972 , Zm00025a027031
Brachypodium KQK05777 , KQK10380
Barley HORVU3Hr1G088350.1 , HORVU3Hr1G088350.3 , HORVU3Hr1G088350.2 , HORVU3Hr1G088350.5 , HORVU3Hr1G088350.4 , HORVU3Hr1G088350.7 , HORVU3Hr1G088350.6 , HORVU1Hr1G070230.10 , HORVU1Hr1G070230.6 , HORVU1Hr1G070230.5 , HORVU1Hr1G070230.4 , HORVU1Hr1G070230.3 , HORVU1Hr1G070230.2 , HORVU1Hr1G070230.1 , HORVU1Hr1G070230.9
Wheat TraesCS1B02G308600 , TraesCS1B02G308600 , TraesCS3A02G346600 , TraesCS1D02G292400 , TraesCS1D02G292400 , TraesCS1D02G292400 , TraesCS1A02G298900 , TraesCS3B02G378400 , TraesCS3D02G340300 , TraesCS3D02G340300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
2 Sobic.009G249200 transmembrane protein, putative, expressed -
3 Sobic.005G105000 STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
5 Sobic.004G267300 bg55, putative, expressed -
6 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
7 Sobic.004G205600 bromodomain domain containing protein, expressed -
8 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
9 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
10 Sobic.010G264200 UPF0183 protein, putative, expressed -
11 Sobic.002G405900 zinc finger, RING-type, putative, expressed -
12 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
13 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
14 Sobic.001G124300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
16 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.003G377800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
19 Sobic.007G104800 expressed protein -
20 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16


Gene co-expression network
sample Sobic009G172400 Sobic009G172400 Sobic003G333600 Sobic003G333600 Sobic009G172400--Sobic003G333600 Sobic009G249200 Sobic009G249200 Sobic009G172400--Sobic009G249200 Sobic005G105000 Sobic005G105000 Sobic009G172400--Sobic005G105000 Sobic009G138100 Sobic009G138100 Sobic009G172400--Sobic009G138100 Sobic004G267300 Sobic004G267300 Sobic009G172400--Sobic004G267300 Sobic003G408500 Sobic003G408500 Sobic009G172400--Sobic003G408500 Sobic004G205600 Sobic004G205600 Sobic009G172400--Sobic004G205600 Sobic001G351700 Sobic001G351700 Sobic009G172400--Sobic001G351700 Sobic010G145900 Sobic010G145900 Sobic009G172400--Sobic010G145900 Sobic007G078000 Sobic007G078000 Sobic003G333600--Sobic007G078000 Sobic001G424700 Sobic001G424700 Sobic003G333600--Sobic001G424700 Sobic001G451000 Sobic001G451000 Sobic003G333600--Sobic001G451000 Sobic010G260500 Sobic010G260500 Sobic003G333600--Sobic010G260500 Sobic004G196700 Sobic004G196700 Sobic003G333600--Sobic004G196700 Sobic001G372700 Sobic001G372700 Sobic003G333600--Sobic001G372700 Sobic007G185900 Sobic007G185900 Sobic003G333600--Sobic007G185900 Sobic004G153600 Sobic004G153600 Sobic003G333600--Sobic004G153600 Sobic005G149500 Sobic005G149500 Sobic003G333600--Sobic005G149500 Sobic007G024700 Sobic007G024700 Sobic009G249200--Sobic007G024700 Sobic001G409600 Sobic001G409600 Sobic009G249200--Sobic001G409600 Sobic006G237400 Sobic006G237400 Sobic009G249200--Sobic006G237400 Sobic009G166300 Sobic009G166300 Sobic009G249200--Sobic009G166300 Sobic004G021100 Sobic004G021100 Sobic009G249200--Sobic004G021100 Sobic010G205800 Sobic010G205800 Sobic009G249200--Sobic010G205800 Sobic009G249200--Sobic003G408500 Sobic002G315200 Sobic002G315200 Sobic009G249200--Sobic002G315200 Sobic009G027300 Sobic009G027300 Sobic009G249200--Sobic009G027300 Sobic005G105000--Sobic009G138100 Sobic005G105000--Sobic009G172400 Sobic010G174500 Sobic010G174500 Sobic005G105000--Sobic010G174500 Sobic003G044200 Sobic003G044200 Sobic005G105000--Sobic003G044200 Sobic001G472600 Sobic001G472600 Sobic005G105000--Sobic001G472600 Sobic003G379700 Sobic003G379700 Sobic005G105000--Sobic003G379700 Sobic006G209400 Sobic006G209400 Sobic005G105000--Sobic006G209400 Sobic003G248200 Sobic003G248200 Sobic005G105000--Sobic003G248200 Sobic005G105000--Sobic004G267300 Sobic010G278200 Sobic010G278200 Sobic009G138100--Sobic010G278200 Sobic010G130000 Sobic010G130000 Sobic009G138100--Sobic010G130000 Sobic009G138100--Sobic003G248200 Sobic001G124200 Sobic001G124200 Sobic009G138100--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic009G138100--Sobic006G033200 Sobic009G228700 Sobic009G228700 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G219000 Sobic009G219000 Sobic009G138100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic009G138100--Sobic001G323000 Sobic009G137800 Sobic009G137800 Sobic004G267300--Sobic009G137800 Sobic007G134600 Sobic007G134600 Sobic004G267300--Sobic007G134600 Sobic008G025900 Sobic008G025900 Sobic004G267300--Sobic008G025900 Sobic003G056100 Sobic003G056100 Sobic004G267300--Sobic003G056100 Sobic004G267300--Sobic001G351700 Sobic004G267300--Sobic009G172400 Sobic002G324200 Sobic002G324200 Sobic004G267300--Sobic002G324200 Sobic010G056000 Sobic010G056000 Sobic004G267300--Sobic010G056000 Sobic004G132150 Sobic004G132150 Sobic004G267300--Sobic004G132150 Sobic003G408500--Sobic009G166300 Sobic005G045300 Sobic005G045300 Sobic003G408500--Sobic005G045300 Sobic001G512700 Sobic001G512700 Sobic003G408500--Sobic001G512700 Sobic003G408500--Sobic004G205600 Sobic007G217000 Sobic007G217000 Sobic003G408500--Sobic007G217000 Sobic003G397800 Sobic003G397800 Sobic003G408500--Sobic003G397800 Sobic003G408500--Sobic004G021100 Sobic001G109800 Sobic001G109800 Sobic003G408500--Sobic001G109800 Sobic004G067700 Sobic004G067700 Sobic003G408500--Sobic004G067700 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic001G351700--Sobic007G134600 Sobic001G351700--Sobic004G267300 Sobic001G290200 Sobic001G290200 Sobic001G351700--Sobic001G290200 Sobic001G351700--Sobic004G021100 Sobic009G056800 Sobic009G056800 Sobic001G351700--Sobic009G056800 Sobic001G306000 Sobic001G306000 Sobic001G351700--Sobic001G306000 Sobic003G433100 Sobic003G433100 Sobic001G351700--Sobic003G433100 Sobic001G351700--Sobic009G172400 Sobic001G371200 Sobic001G371200 Sobic001G351700--Sobic001G371200 Sobic010G264400 Sobic010G264400 Sobic010G145900--Sobic010G264400 Sobic003G305400 Sobic003G305400 Sobic010G145900--Sobic003G305400 Sobic006G209500 Sobic006G209500 Sobic010G145900--Sobic006G209500 Sobic004G263900 Sobic004G263900 Sobic010G145900--Sobic004G263900 Sobic001G372000 Sobic001G372000 Sobic010G145900--Sobic001G372000 Sobic003G185200 Sobic003G185200 Sobic010G145900--Sobic003G185200 Sobic001G478300 Sobic001G478300 Sobic010G145900--Sobic001G478300 Sobic010G145900--Sobic010G260500 Sobic004G350100 Sobic004G350100 Sobic010G145900--Sobic004G350100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.