Gene annotation
Transcriptome id Sobic.003G377800.1
Synonym Sb03g041750
Functional annotation DNA repair metallo-beta-lactamase, putative, expressed
UniProt C5XRF5
Pfam PF12706 PF07522
Panther DB PTHR23240 PTHR23240:SF11
NCBI CDD -
KEGG Orthology K15340; DCLRE1A, SNM1A, DNA cross-link repair 1A protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19025 : DNA repair metallo-beta-lactamase family protein
RAP-DB (Rice) LOC_Os01g65890.1 : DNA repair metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a026570
Brachypodium KQK10893
Barley HORVU3Hr1G091240.11 , HORVU3Hr1G091240.10 , HORVU3Hr1G091240.12 , HORVU3Hr1G091240.9 , HORVU3Hr1G091240.8 , HORVU3Hr1G091240.5 , HORVU3Hr1G091240.4 , HORVU3Hr1G091240.7 , HORVU3Hr1G091240.6 , HORVU3Hr1G091240.1 , HORVU3Hr1G091240.3 , HORVU3Hr1G091240.2
Wheat TraesCS6A02G379400 , TraesCS3A02G408100 , TraesCS6A02G379300 , TraesCS3D02G403200 , TraesCS3B02G441700
Populus -


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cDNA sequences
Sobic.003G377800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
2 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
3 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
4 Sobic.002G405900 zinc finger, RING-type, putative, expressed -
5 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
6 Sobic.004G002400 expressed protein -
7 Sobic.009G249200 transmembrane protein, putative, expressed -
8 Sobic.009G121100 expressed protein -
9 Sobic.002G310200 expressed protein -
10 Sobic.010G264200 UPF0183 protein, putative, expressed -
11 Sobic.007G134600 agenet domain containing protein, expressed -
12 Sobic.009G172400 VHS and GAT domain containing protein, expressed -
13 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
14 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
15 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
16 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
17 Sobic.004G205600 bromodomain domain containing protein, expressed -
18 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
19 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
20 Sobic.004G267300 bg55, putative, expressed -


Gene co-expression network
sample Sobic003G377800 Sobic003G377800 Sobic001G125200 Sobic001G125200 Sobic003G377800--Sobic001G125200 Sobic007G217000 Sobic007G217000 Sobic003G377800--Sobic007G217000 Sobic010G145900 Sobic010G145900 Sobic003G377800--Sobic010G145900 Sobic002G405900 Sobic002G405900 Sobic003G377800--Sobic002G405900 Sobic003G056100 Sobic003G056100 Sobic003G377800--Sobic003G056100 Sobic004G002400 Sobic004G002400 Sobic003G377800--Sobic004G002400 Sobic009G249200 Sobic009G249200 Sobic003G377800--Sobic009G249200 Sobic009G121100 Sobic009G121100 Sobic003G377800--Sobic009G121100 Sobic002G310200 Sobic002G310200 Sobic003G377800--Sobic002G310200 Sobic001G474600 Sobic001G474600 Sobic001G125200--Sobic001G474600 Sobic001G125200--Sobic003G056100 Sobic007G207000 Sobic007G207000 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic009G026500 Sobic009G026500 Sobic001G125200--Sobic009G026500 Sobic009G166300 Sobic009G166300 Sobic001G125200--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G125200--Sobic001G409600 Sobic002G006900 Sobic002G006900 Sobic001G125200--Sobic002G006900 Sobic001G125200--Sobic007G217000 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic008G047800 Sobic008G047800 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic001G155000 Sobic001G155000 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic010G264400 Sobic010G264400 Sobic010G145900--Sobic010G264400 Sobic003G305400 Sobic003G305400 Sobic010G145900--Sobic003G305400 Sobic006G209500 Sobic006G209500 Sobic010G145900--Sobic006G209500 Sobic004G263900 Sobic004G263900 Sobic010G145900--Sobic004G263900 Sobic001G372000 Sobic001G372000 Sobic010G145900--Sobic001G372000 Sobic003G185200 Sobic003G185200 Sobic010G145900--Sobic003G185200 Sobic001G478300 Sobic001G478300 Sobic010G145900--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic010G145900--Sobic010G260500 Sobic004G350100 Sobic004G350100 Sobic010G145900--Sobic004G350100 Sobic002G405900--Sobic001G409600 Sobic004G205600 Sobic004G205600 Sobic002G405900--Sobic004G205600 Sobic001G466700 Sobic001G466700 Sobic002G405900--Sobic001G466700 Sobic004G021100 Sobic004G021100 Sobic002G405900--Sobic004G021100 Sobic002G405900--Sobic007G217000 Sobic002G405900--Sobic002G310200 Sobic003G187400 Sobic003G187400 Sobic002G405900--Sobic003G187400 Sobic002G405900--Sobic003G056100 Sobic002G388200 Sobic002G388200 Sobic002G405900--Sobic002G388200 Sobic003G056100--Sobic001G125200 Sobic003G056100--Sobic002G006900 Sobic008G067600 Sobic008G067600 Sobic003G056100--Sobic008G067600 Sobic001G512700 Sobic001G512700 Sobic003G056100--Sobic001G512700 Sobic001G497300 Sobic001G497300 Sobic003G056100--Sobic001G497300 Sobic002G315200 Sobic002G315200 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic003G056100--Sobic007G217000 Sobic001G281100 Sobic001G281100 Sobic004G002400--Sobic001G281100 Sobic004G039600 Sobic004G039600 Sobic004G002400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic004G002400--Sobic003G187500 Sobic007G132100 Sobic007G132100 Sobic004G002400--Sobic007G132100 Sobic006G126100 Sobic006G126100 Sobic004G002400--Sobic006G126100 Sobic001G124200 Sobic001G124200 Sobic004G002400--Sobic001G124200 Sobic004G002400--Sobic001G466700 Sobic004G002400--Sobic009G249200 Sobic001G534800 Sobic001G534800 Sobic004G002400--Sobic001G534800 Sobic007G024700 Sobic007G024700 Sobic009G249200--Sobic007G024700 Sobic009G249200--Sobic001G409600 Sobic006G237400 Sobic006G237400 Sobic009G249200--Sobic006G237400 Sobic009G249200--Sobic009G166300 Sobic009G249200--Sobic004G021100 Sobic010G205800 Sobic010G205800 Sobic009G249200--Sobic010G205800 Sobic003G408500 Sobic003G408500 Sobic009G249200--Sobic003G408500 Sobic009G249200--Sobic002G315200 Sobic009G027300 Sobic009G027300 Sobic009G249200--Sobic009G027300 Sobic006G214500 Sobic006G214500 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic001G156100 Sobic001G156100 Sobic009G121100--Sobic001G156100 Sobic001G443900 Sobic001G443900 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic002G303000 Sobic002G303000 Sobic009G121100--Sobic002G303000 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic002G310200--Sobic008G067600 Sobic002G310200--Sobic004G067700
Octagon: transcription factors


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